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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Myositis Polymyositis
8 genes
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2 of 8 corroborated by 2+ sources
DGKQ(1), SDK2(1), HLA-DQB1(2), PTPN22(1), STAT4(2), BLK(1), FAM167A(1), NAB1(1)
0.105 0.364 1.15e-14 1.61e-13 ✓ sig. Cluster 25 →
Allergic contact dermatitis Atopic dermatitis
11 genes
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9 of 11 corroborated by 2+ sources
IL10(2), IL2(2), IL4(2), TLR4(1), TNF(2), IFNG(2), CYP1A1(2), IL18(2), IL5(2), NAT2(1), SELE(2)
0.085 0.167 1.08e-14 1.52e-13 ✓ sig. Cluster 16 →
Hereditary hearing loss Meniere disease
10 genes
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10 of 10 corroborated by 2+ sources
PCDH15(2), MYO6(2), TRIOBP(2), CDH23(2), MYO7A(2), WFS1(2), MYH14(2), MYH9(2), TECTA(2), USH1C(2)
0.093 0.200 1.08e-14 1.51e-13 ✓ sig. Cluster 26 →
Fatty liver Hyperglycemia
11 genes
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11 of 11 corroborated by 2+ sources
INS(2), LEP(2), NFE2L2(2), PON1(2), TF(2), SOD1(2), GPX1(2), CCL2(2), COL3A1(2), NUS1(2), LEPR(2)
0.081 0.212 1.05e-14 1.47e-13 ✓ sig. —
Distal spinal muscular atrophy Motor neuron disease
9 genes
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1 of 9 corroborated by 2+ sources
SETX(1), TRPV4(1), DCTN1(1), DYNC1H1(1), NEFL(1), SH3TC2(1), PLEKHG5(1), GARS1(1), IGHMBP2(3)
0.096 0.290 1.04e-14 1.45e-13 ✓ sig. Cluster 15 →
Cerebrovascular disorder Large artery stroke
12 genes
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5 of 12 corroborated by 2+ sources
SH2B3(2), HDAC9(2), MMP12(2), SMARCA4(1), ATXN2(1), TWIST1(1), ABO(2), CELSR2(1), LPA(1), MMP13(1), PSRC1(1), EDNRA(2)
0.079 0.154 9.98e-15 1.40e-13 ✓ sig. —
Cerebral amyloid angiopathy Dementia
22 genes
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4 of 22 corroborated by 2+ sources
APP(6), ITM2B(3), APOE(3), DOCK10(1), EFHB(1), FSTL5(1), GRIK2(1), KAZN(1), KCNH8(1), NCK2(1), NECTIN2(1), PTPRD(1) +10 more
0.034 0.310 9.96e-15 1.40e-13 ✓ sig. —
Ovarian epithelial cancer Ovarian serous carcinoma
20 genes
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HNF1B(1), TERT(1), BNC2(1), GABRG3(1), HLA-DRB5(1), JAZF1(1), MECOM(1), NSF(1), PLEKHM1(1), TTC28(1), LAMA3(1), RSPO1(1) +8 more
0.055 0.174 9.81e-15 1.38e-13 ✓ sig. Cluster 20 →
Lung disease Rhinitis
12 genes
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5 of 12 corroborated by 2+ sources
CAT(2), SERPINE1(1), IL1B(1), IL2(1), TNF(2), PTGS2(2), IL13(2), IL18(1), TLR2(1), CFTR(2), IL4R(1), SFTPD(1)
0.077 0.185 9.79e-15 1.38e-13 ✓ sig. —
Congenital nystagmus Nystagmus
6 genes
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4 of 6 corroborated by 2+ sources
ATF6(2), ROBO1(4), RPE65(2), PAX6(1), AHR(2), TYR(1)
0.130 0.750 9.19e-15 1.29e-13 ✓ sig. —
Corneal ulcer Eye disease
7 genes
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UBE2V2(1), RDX(1), ALPK1(1), SLC9A9(1), UTRN(1), NTF4(1), CCBE1(1)
0.072 0.778 8.97e-15 1.26e-13 ✓ sig. Cluster 399 →
46,xy gonadal dysgenesis 46,xy sex reversal
5 genes
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4 of 5 corroborated by 2+ sources
NR5A1(2), SRY(1), CBX2(2), DHX37(2), MAP3K1(2)
0.278 0.714 8.74e-15 1.23e-13 ✓ sig. Cluster 38 →
Edema Hypotension
10 genes
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INS(1), CAT(1), TNF(1), IL6(1), POMC(1), TAC1(1), KNG1(1), OXT(1), VIP(1), SLC9A3(1)
0.093 0.204 8.68e-15 1.22e-13 ✓ sig. Cluster 13 →
Colitis Rhinitis
9 genes
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8 of 9 corroborated by 2+ sources
SERPINE1(1), HMOX1(2), IL10(2), IL1B(2), IL4(2), TNF(2), PTGS2(2), IFNG(2), IL17A(2)
0.100 0.273 8.52e-15 1.20e-13 ✓ sig. —
Vitamin b12 deficiency Vitamin deficiency disorder
5 genes
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FUT2(1), TCN2(1), CUBN(1), TCN1(1), OOSP3(1)
0.313 0.556 8.06e-15 1.14e-13 ✓ sig. Cluster 106 →
Congenital total cataract Nuclear cataract
6 genes
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6 of 6 corroborated by 2+ sources
CRYBB2(3), CRYAA(3), EPHA2(3), GJA8(3), MIP(3), FYCO1(3)
0.207 0.375 7.98e-15 1.13e-13 ✓ sig. Cluster 43 →
Fanconi anemia Hereditary breast cancer
8 genes
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8 of 8 corroborated by 2+ sources
XRCC2(7), RAD51(6), FANCM(7), PALB2(8), BRCA2(8), BRIP1(8), BRCA1(6), SLX4(8)
0.125 0.250 7.92e-15 1.12e-13 ✓ sig. Cluster 132 →
Esophageal neoplasms Mouth neoplasms
11 genes
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TP53(1), ENO1(1), GAPDH(1), SOD2(1), PTGS2(1), ADH1B(1), CDKN2A(1), SFN(1), CRYAB(1), SERPINB3(1), ADH7(1)
0.087 0.175 7.35e-15 1.04e-13 ✓ sig. Cluster 5 →
Berardinelli-seip congenital lipodystrophy Lipodystrophy
5 genes
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5 of 5 corroborated by 2+ sources
PPARG(4), CAV1(5), BSCL2(5), CAVIN1(5), AGPAT2(6)
0.250 0.833 7.13e-15 1.01e-13 ✓ sig. Cluster 71 →
Adenoid cystic carcinoma Transitional cell carcinoma
10 genes
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TP53(1), ARID1A(1), KMT2C(1), CREBBP(1), DAPK1(1), KDM6A(1), HRAS(1), EP300(1), CCND1(1), ESPL1(1)
0.081 0.303 6.88e-15 9.75e-14 ✓ sig. —
Deficiency anemia Megaloblastic anemia
6 genes
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3 of 6 corroborated by 2+ sources
FUT2(1), TCN2(3), CUBN(2), TCN1(2), MMAA(1), OOSP3(1)
0.194 0.500 6.68e-15 9.48e-14 ✓ sig. Cluster 106 →
Neutropenia Severe congenital neutropenia
8 genes
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8 of 8 corroborated by 2+ sources
CLPB(5), CSF3R(6), ELANE(7), SRP19(2), SEC61A1(3), SMARCD2(2), JAGN1(5), SRP68(3)
0.111 0.364 6.49e-15 9.21e-14 ✓ sig. Cluster 209 →
De toni-debre-fanconi syndrome Fanconi syndrome
4 genes
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4 of 4 corroborated by 2+ sources
GATM(4), EHHADH(4), NDUFAF6(3), SLC34A1(3)
0.571 1.000 6.41e-15 9.10e-14 ✓ sig. Cluster 99 →
Bethlem myopathy Ullrich congenital muscular dystrophy
4 genes
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4 of 4 corroborated by 2+ sources
COL12A1(7), COL6A3(6), COL6A1(7), COL6A2(6)
0.571 1.000 6.41e-15 9.10e-14 ✓ sig. Cluster 393 →
Fanconi renotubular syndrome Fanconi syndrome
4 genes
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4 of 4 corroborated by 2+ sources
GATM(8), EHHADH(7), NDUFAF6(6), SLC34A1(7)
0.571 1.000 6.41e-15 9.10e-14 ✓ sig. Cluster 99 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.