Log in to bookmark this gene

Bookmark This Gene

Gene Gene information from NCBI Gene database.
Entrez ID 137682
Gene name NADH:ubiquinone oxidoreductase complex assembly factor 6
Gene symbol NDUFAF6
Synonyms (NCBI Gene)
C8orf38FRTS5MC1DN17lncREST
Chromosome 8
Chromosome location 8q22.1
Summary This gene encodes a protein that localizes to mitochondria and contains a predicted phytoene synthase domain. The encoded protein plays an important role in the assembly of complex I (NADH-ubiquinone oxidoreductase) of the mitochondrial respiratory chain
SNPs SNP information provided by dbSNP.
21 Show/Hide all (21)
SNP ID Visualize variation Clinical significance Consequence
rs137853184 A>G Pathogenic Coding sequence variant, genic downstream transcript variant, missense variant, intron variant, 5 prime UTR variant, non coding transcript variant
rs201088736 G>C Pathogenic Non coding transcript variant, missense variant, genic downstream transcript variant, coding sequence variant
rs201732170 T>A,C Pathogenic, uncertain-significance Non coding transcript variant, 5 prime UTR variant, missense variant, coding sequence variant, genic downstream transcript variant
rs202047755 T>C Conflicting-interpretations-of-pathogenicity, likely-benign Non coding transcript variant, synonymous variant, genic downstream transcript variant, coding sequence variant
rs552141388 T>C,G Likely-pathogenic Initiator codon variant, genic downstream transcript variant, non coding transcript variant, intron variant, missense variant, 5 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
28 Show/Hide all (28)
miRTarBase ID miRNA Experiments Reference
MIRT644367 hsa-miR-129-1-3p HITS-CLIP 23824327
MIRT644366 hsa-miR-129-2-3p HITS-CLIP 23824327
MIRT644365 hsa-miR-3127-3p HITS-CLIP 23824327
MIRT644364 hsa-miR-6756-3p HITS-CLIP 23824327
MIRT644363 hsa-miR-6734-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
14 Show/Hide all (14)
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005634 Component Nucleus IDA 22019594
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IDA 22019594
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612392 28625 ENSG00000156170
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q330K2
Protein name NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 (Putative phytoene synthase)
Protein function Involved in the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) at early stages. May play a role in the biogenesis of complex I subunit MT-ND1.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00494 SQS_PSY 65 → 321 Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. A lower expression is observed in lung and kidney compared to heart, muscle and liver (PubMed:27466185). In the kidney, expression is high in the basal zone of the proximal tubular cells (PubMed:27466185). {ECO:000026
Sequence
Sequence length 333
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
KEGG Pathway Reactome Pathway
Thermogenesis Complex I biogenesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Developmental regression Likely pathogenic rs1224421127 RCV000627000
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial prostate cancer Likely pathogenic; Pathogenic rs753873681 RCV005909194
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Fanconi renotubular syndrome 5 Likely pathogenic; Pathogenic rs762093523, rs777821109 RCV005050359
RCV005355998
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Leigh syndrome Likely pathogenic; Pathogenic rs762620949, rs753873681 RCV000626222
RCV001249207
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Mitochondrial complex I deficiency, nuclear type 17 Likely pathogenic; Pathogenic rs1829405389, rs1829405956, rs762093523, rs137853184, rs768273248, rs1057519084, rs1057519085, rs777821109, rs765915512, rs749738738, rs1179490149, rs753873681 RCV001330427
RCV001374467
RCV001374720
RCV000000577
RCV000412599
View all (7 more)
★★★★★
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Show/Hide Unknown Diseases (34)
Phenotype Name Clinical Significance Source Reference Evidence Score
Acute myeloid leukemia Uncertain significance ClinVar —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE — GWAS catalog 24162737, 30820047, 31473137, 35379992
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANDROGENETIC ALOPECIA — GWAS catalog 30573740
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOVASCULAR DISEASE — GWAS catalog 30595370, 37947095
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Uncertain significance ClinVar —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (49)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer Disease Alzheimer disease Pubtator 31473137, 35237031, 35699875, 35715361 Associate
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alzheimer`s Disease Alzheimer disease GWASDB_DG 24162737
★★★★★
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease GWASCAT_DG 24162737, 31473137
★★★★★
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 37950222 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Cardiovascular Diseases Cardiovascular Diseases GWASCAT_DG 30595370
★★★★★
★☆☆☆☆
Found in Text Mining only
Cerebral Small Vessel Diseases Cerebral microangiopathy Pubtator 35699875 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Childhood Onset Dystonias Dystonia BEFREE 30642748
★★★★★
★☆☆☆☆
Found in Text Mining only
De Toni-Debre-Fanconi Syndrome Fanconi Syndrome BEFREE 27466185
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations