Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bipolar disorder Parkinson disease
103 genes
Show details
53 of 103 corroborated by 2+ sources
RERE(1), INS(2), WWOX(1), GFAP(2), ATP1A3(2), APOE(2), CACNA2D3(1), CAMK1D(1), CNTNAP2(3), DLG2(2), ESR2(2), FSTL5(3) +91 more
0.063 0.195 4.43e-18 7.67e-17 ✓ sig. Cluster 2 →
Chromosome y microdeletion syndrome Spermatogenic failure, y-linked
6 genes
Show details
6 of 6 corroborated by 2+ sources
DDX3Y(5), DAZ1(4), DAZ2(4), DAZ3(4), RBMY1A1(4), USP9Y(5)
0.353 0.750 4.54e-18 7.87e-17 ✓ sig. —
Dentin dysplasia Hypomaturation amelogenesis imperfecta
6 genes
Show details
6 of 6 corroborated by 2+ sources
SLC24A4(2), AMELX(2), KLK4(2), MMP20(2), ODAPH(2), WDR72(2)
0.316 0.857 4.68e-18 8.09e-17 ✓ sig. Cluster 366 →
Complement component deficiency Terminal complement component deficiency
6 genes
Show details
6 of 6 corroborated by 2+ sources
C8B(4), C5(5), C9(4), C8A(4), C6(5), C7(5)
0.316 0.857 4.68e-18 8.09e-17 ✓ sig. Cluster 383 →
Glaucoma Macular degeneration
18 genes
Show details
9 of 18 corroborated by 2+ sources
CFI(3), APOE(3), HERC2(1), C2(3), C3(3), PON1(1), RAD51B(1), CFB(3), CETP(1), CFH(3), HERPUD1(1), ARMS2(3) +6 more
0.063 0.269 4.69e-18 8.09e-17 ✓ sig. —
Majewski syndrome Short-rib thoracic dysplasia
7 genes
Show details
7 of 7 corroborated by 2+ sources
NEK1(4), IFT80(2), DYNC2H1(2), DYNC2LI1(4), IFT172(4), TTC21B(2), WDR35(5)
0.241 0.583 4.75e-18 8.20e-17 ✓ sig. Cluster 22 →
Psychiatric disorders Tourette syndrome
29 genes
Show details
1 of 29 corroborated by 2+ sources
CAMTA1(1), DCC(1), LSAMP(1), PTPRF(1), RIMS1(1), SORCS3(1), TCF4(1), THSD7A(1), TMEM106B(1), DRD2(1), ANKS1B(1), CACNA1C(2) +17 more
0.065 0.132 4.82e-18 8.32e-17 ✓ sig. Cluster 69 →
Thrombocythemia Thrombocytosis
5 genes
Show details
5 of 5 corroborated by 2+ sources
SH2B3(4), MPL(7), THPO(7), JAK2(6), CALR(4)
0.625 0.833 4.99e-18 8.60e-17 ✓ sig. Cluster 53 →
Atopic dermatitis Obstructive airway disease
14 genes
Show details
4 of 14 corroborated by 2+ sources
GSTP1(1), GSTT1(1), IL1B(2), MBL2(1), TLR4(1), TNF(1), IL6(2), GSTM1(1), VDR(1), TGFB1(1), CTLA4(1), CYP1A1(2) +2 more
0.092 0.212 5.42e-18 9.34e-17 ✓ sig. —
Autoimmune hepatitis Hashimoto disease
9 genes
Show details
5 of 9 corroborated by 2+ sources
SH2B3(1), C1S(2), HLA-DQA1(1), HLA-DRB1(2), ICOS(1), ATXN2(1), IL6(2), CTLA4(3), STAT4(2)
0.158 0.333 5.54e-18 9.53e-17 ✓ sig. —
Developmental and epileptic encephalopathy Developmental disability
23 genes
Show details
22 of 23 corroborated by 2+ sources
UBE3A(1), PTEN(2), GRIN2B(4), KCNQ2(7), NTRK2(6), SCN8A(7), CHRNA4(2), ARHGEF9(4), CASK(3), MECP2(2), PPP3CA(6), SLC2A1(2) +11 more
0.067 0.161 5.71e-18 9.81e-17 ✓ sig. Cluster 6 →
Behcet disease Giant cell arteritis
10 genes
Show details
4 of 10 corroborated by 2+ sources
HLA-DRB1(2), IL4(1), MBL2(1), TLR4(2), CCL2(1), HLA-B(4), PTPN22(2), FCGR3A(1), IL18(1), IL21R(1)
0.088 0.556 5.86e-18 1.01e-16 ✓ sig. —
Congenital cartilage disorder Epiphyseal dysplasia
7 genes
Show details
7 of 7 corroborated by 2+ sources
SLC26A2(3), COL2A1(3), COMP(3), COL9A1(5), COL9A2(5), COL9A3(5), MATN3(3)
0.206 0.700 5.98e-18 1.03e-16 ✓ sig. —
Autoimmune thyroid disease Oligoarticular juvenile idiopathic arthritis
21 genes
Show details
14 of 21 corroborated by 2+ sources
RERE(2), ANKRD55(2), HLA-DQA1(2), HLA-DRB1(1), ATXN2(1), HLA-DQB1(2), IRF1(1), SMAD3(2), ADCY7(2), CTLA4(2), IL2RA(3), PHTF1(1) +9 more
0.071 0.146 6.35e-18 1.09e-16 ✓ sig. —
Nephrotic syndrome Proteinuria
14 genes
Show details
14 of 14 corroborated by 2+ sources
AGT(2), HLA-DQA1(2), HLA-DRB1(3), NCK2(2), REN(2), SOD1(2), ALB(2), TGFB1(2), IL1RN(2), MUC16(2), LMX1B(2), NCK1(2) +2 more
0.072 0.333 6.69e-18 1.15e-16 ✓ sig. Cluster 30 →
Lymphocytic leukemia Non-hodgkins lymphoma
18 genes
Show details
TERT(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), RHOU(1), BCL2(1), HLA-DQB1(1), EXOC2(1), IRF4(1), EOMES(1), SP140(1), IRF8(1) +6 more
0.077 0.157 6.80e-18 1.16e-16 ✓ sig. —
Lymphoid leukemia Multiple myeloma
12 genes
Show details
1 of 12 corroborated by 2+ sources
GRAMD1B(1), GRIP1(1), HLA-DQB1(1), EXOC2(1), IRF4(2), SP140(1), IRF8(1), ACOXL(1), MYNN(1), ACTRT3(1), BMF(1), SP140L(1)
0.075 0.429 6.90e-18 1.18e-16 ✓ sig. Cluster 225 →
Intellectual disability Nonsyndromic intellectual disability
16 genes
Show details
14 of 16 corroborated by 2+ sources
CRBN(3), GRIN2B(2), KDM5B(4), SCN8A(2), ST3GAL3(2), TCF4(3), TUSC3(3), ZC3H14(4), ZNF292(1), JARID2(1), RAB11A(2), STXBP1(2) +4 more
0.079 0.211 6.95e-18 1.19e-16 ✓ sig. Cluster 6 →
Generalized lipodystrophy Lipodystrophy
6 genes
Show details
6 of 6 corroborated by 2+ sources
PPARG(4), CAV1(5), BSCL2(5), CAVIN1(5), AGPAT2(5), PCYT1A(3)
0.300 0.857 7.02e-18 1.20e-16 ✓ sig. Cluster 71 →
Arima syndrome Joubert syndrome
7 genes
Show details
7 of 7 corroborated by 2+ sources
ZNF423(3), CC2D2A(5), CEP290(6), TMEM138(6), TMEM216(6), TMEM231(5), TMEM237(6)
0.119 1.000 7.39e-18 1.26e-16 ✓ sig. Cluster 8 →
Cerebrovascular disorder Thrombosis
12 genes
Show details
12 of 12 corroborated by 2+ sources
FGA(2), AGT(2), PLAU(2), F2(2), TNF(2), PLAT(2), PTGS2(2), PDE3A(2), F5(2), CRP(2), VKORC1(2), P2RY12(2)
0.102 0.267 7.63e-18 1.30e-16 ✓ sig. —
Angioedema Urticaria
11 genes
Show details
1 of 11 corroborated by 2+ sources
BANK1(1), HLA-DRB1(1), RIMS1(1), HLA-DQB1(1), ALB(1), RAD51B(1), ABI3BP(1), HLA-DPB1(1), HLF(1), IFT43(1), F12(3)
0.118 0.239 7.76e-18 1.32e-16 ✓ sig. Cluster 16 →
Beta thalassemia Sickle cell anemia
8 genes
Show details
6 of 8 corroborated by 2+ sources
BCL11A(2), GSTT1(1), TNF(2), HLA-DQB1(1), HBB(8), CAD(2), UMPS(2), DHODH(2)
0.190 0.381 7.96e-18 1.36e-16 ✓ sig. —
Hypertension Osteoarthritis
122 genes
Show details
37 of 122 corroborated by 2+ sources
HMGA2(1), TBX4(1), CYP11B2(2), PIK3R1(1), ADK(1), AMPD3(1), ALDH1A2(2), APOC1(1), APOE(3), ARL17B(1), BANK1(1), BCAS3(1) +110 more
0.069 0.167 8.16e-18 1.39e-16 ✓ sig. —
Ischemic heart disease Large artery stroke
17 genes
Show details
17 of 17 corroborated by 2+ sources
SH2B3(2), ABCG8(2), JCAD(2), MMP12(2), MMP3(2), WDR12(2), TWIST1(2), ABO(2), CELSR2(2), PSRC1(2), FURIN(2), PHACTR1(2) +5 more
0.073 0.218 8.36e-18 1.42e-16 ✓ sig. Cluster 139 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.