Gene Gene information from NCBI Gene database.
Entrez ID 6513
Gene name Solute carrier family 2 member 1
Gene symbol SLC2A1
Synonyms (NCBI Gene)
CSEDYT17DYT18DYT9EIG12GLUTGLUT-1GLUT1GLUT1DSHTLVRPEDSDCHCN
Chromosome 1
Chromosome location 1p34.2
Summary This gene encodes a major glucose transporter in the mammalian blood-brain barrier. The encoded protein is found primarily in the cell membrane and on the cell surface, where it can also function as a receptor for human T-cell leukemia virus (HTLV) I and
SNPs SNP information provided by dbSNP.
146
SNP ID Visualize variation Clinical significance Consequence
rs13306758 G>A,T Likely-pathogenic, benign, likely-benign, risk-factor, pathogenic Coding sequence variant, synonymous variant, missense variant
rs34025424 C>A,T Benign-likely-benign, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs55693364 C>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs75485205 G>A,T Likely-benign, benign, pathogenic, benign-likely-benign Stop gained, coding sequence variant, synonymous variant
rs75852730 G>A Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
370
miRTarBase ID miRNA Experiments Reference
MIRT045432 hsa-miR-149-5p CLASH 23622248
MIRT044855 hsa-miR-320a CLASH 23622248
MIRT042866 hsa-miR-324-3p CLASH 23622248
MIRT041808 hsa-miR-484 CLASH 23622248
MIRT035848 hsa-miR-1262 CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
5
Transcription factor Regulation Reference
ATM Repression 20676049
HDAC5 Activation 22991226
HIF1A Activation 15525582
HIF1A Unknown 16025159;17426252;17486380;18097583
TP53 Repression 22483234
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
86
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane TAS
GO:0001666 Process Response to hypoxia IEA
GO:0001674 Component Female germ cell nucleus IEA
GO:0001917 Component Photoreceptor inner segment IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
138140 11005 ENSG00000117394
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P11166
Protein name Solute carrier family 2, facilitated glucose transporter member 1 (Glucose transporter type 1, erythrocyte/brain) (GLUT-1) (HepG2 glucose transporter)
Protein function Facilitative glucose transporter, which is responsible for constitutive or basal glucose uptake (PubMed:10227690, PubMed:10954735, PubMed:18245775, PubMed:19449892, PubMed:25982116, PubMed:27078104, PubMed:32860739). Has a very broad substrate s
PDB 4PYP , 5EQG , 5EQH , 5EQI , 6THA
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00083 Sugar_tr 16 467 Sugar (and other) transporter Family
Tissue specificity TISSUE SPECIFICITY: Detected in erythrocytes (at protein level). Expressed at variable levels in many human tissues. {ECO:0000269|PubMed:23219802}.
Sequence
Sequence length 492
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
71
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of metabolism/homeostasis Pathogenic rs1431778557 RCV001003569
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cerebellar ataxia Pathogenic rs1057518821 RCV000415305
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Childhood onset GLUT1 deficiency syndrome 2 Likely pathogenic; Pathogenic rs13306758, rs1643479461, rs2124449089, rs2124448826, rs11537641, rs2124447951, rs2124446500, rs2524992538, rs80359825, rs794729221, rs80359826, rs796053248, rs796053272, rs794727870, rs776095655
View all (22 more)
RCV000762930
RCV005867010
RCV001449667
RCV001542520
RCV006257338
View all (33 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Chromosome 17q23.1-q23.2 deletion syndrome Likely pathogenic; Pathogenic rs80359818 RCV004791223
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATAXIA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beckwith-Wiedemann syndrome Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BELL'S PALSY GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ACTH-INDEPENDENT MACRONODULAR ADRENAL HYPERPLASIA 2 Acth-independent macronodular adrenal hyperplasia BEFREE 25766729
★☆☆☆☆
Found in Text Mining only
Actinic keratosis Actinic keratosis BEFREE 9344196
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 29971769
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 10870060, 12367793, 17046099, 18026974, 20884076, 22200795, 26539827, 28212997, 28644754, 30306561, 30552981, 30797490, 31271267, 31668020, 31792836
View all (1 more)
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 17452775
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 10806301
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 29719622
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 22253523
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 23076555, 26539827, 28212997, 29225472, 29374742, 29756233, 31186081, 31355526, 31421224, 31516564
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 26692443
★☆☆☆☆
Found in Text Mining only