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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Anxiety disorder Neurotic disorder
38 genes
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4 of 38 corroborated by 2+ sources
SOX5(1), CYP17A1(1), ARHGAP15(1), CELF4(1), DCC(1), EPHA4(1), FARP1(1), FOXP2(1), GRM8(3), MAD1L1(1), MAPT(3), SDK1(1) +26 more
0.070 0.260 2.92e-26 7.60e-25 ✓ sig. Cluster 2 →
Colonic neoplasms Ovarian neoplasms
28 genes
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TP53(1), EGFR(1), GRIK2(1), MACIR(1), MECOM(1), PRKN(1), SOD2(1), STAT3(1), CTNNB1(1), TRMT11(1), KRAS(1), TYMS(1) +16 more
0.091 0.214 2.99e-26 7.77e-25 ✓ sig. Cluster 5 →
Gastroesophageal reflux disease Obstructive pulmonary disease
56 genes
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DPYD(1), ATP2A2(1), CACNA1D(1), AFF3(1), AKAP6(1), APOE(1), CABP1(1), CAPZA3(1), CCDC91(1), CELF4(1), CHRM3(1), CSMD1(1) +44 more
0.072 0.201 3.17e-26 8.20e-25 ✓ sig. —
Behcet disease Sclerosing cholangitis
27 genes
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20 of 27 corroborated by 2+ sources
FUT2(1), HLA-DRB1(2), IL19(1), KRTCAP2(1), FAS(3), IL10(4), IL2(2), STAT3(2), TLR4(3), HLA-DQB1(2), PARK7(1), THADA(1) +15 more
0.087 0.257 3.41e-26 8.84e-25 ✓ sig. —
Partington syndrome X-linked syndromic intellectual disability
8 genes
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8 of 8 corroborated by 2+ sources
CASK(2), ZC4H2(2), RPL10(2), BRWD3(2), LAS1L(2), NONO(2), DDX3X(2), USP9X(2)
0.533 1.000 3.84e-26 9.91e-25 ✓ sig. Cluster 320 →
Perrault syndrome Xx gonadal dysgenesis syndrome
8 genes
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8 of 8 corroborated by 2+ sources
LARS2(6), PRORP(2), TWNK(5), HSD17B4(6), RMND1(2), ERAL1(5), HARS2(6), GGPS1(2)
0.533 1.000 3.84e-26 9.91e-25 ✓ sig. Cluster 336 →
Urinary bladder cancer Urinary system neoplasms
11 genes
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TERT(1), PSCA(1), LSP1(1), C19orf12(1), LY6K(1), CCNE1(1), GSTM2(1), ACTRT3(1), SLBP(1), FAM53A(1), BRK1(1)
0.162 0.917 4.46e-26 1.15e-24 ✓ sig. —
Myasthenic syndrome Presynaptic congenital myasthenic syndrome
10 genes
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10 of 10 corroborated by 2+ sources
AGRN(5), CHAT(4), MYO9A(6), SNAP25(4), VAMP1(6), SYT2(6), SLC5A7(5), COL13A1(5), SLC25A1(5), SLC18A3(4)
0.238 0.909 4.52e-26 1.16e-24 ✓ sig. Cluster 34 →
Lung neoplasms Ovarian neoplasms
30 genes
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PTEN(1), TERT(1), TP53(1), TP63(1), EGFR(1), PRKN(1), STAT3(1), TLR4(1), IL6(1), AKT1(1), CAV1(1), MAPK1(1) +18 more
0.084 0.229 4.62e-26 1.19e-24 ✓ sig. Cluster 5 →
Autoimmune hepatitis Graves disease
16 genes
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13 of 16 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), ICOS(1), IL10(2), IL2(2), IL4(2), IL6(2), HLA-DQB1(2), VDR(1), TGFB1(2), IFNG(2), CTLA4(3) +4 more
0.131 0.421 4.75e-26 1.22e-24 ✓ sig. —
Mitochondrial disease Mitochondrial dna depletion syndrome
18 genes
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16 of 18 corroborated by 2+ sources
RRM2B(6), MGME1(6), POLG(5), OPA1(5), TWNK(5), POLGARF(1), SLC25A4(6), SCO2(2), TK2(8), SLC25A10(6), TYMP(5), FANCI(1) +6 more
0.071 0.621 5.37e-26 1.38e-24 ✓ sig. —
Bilirubin metabolism disease Crigler-najjar syndrome
8 genes
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8 of 8 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.571 0.889 5.69e-26 1.45e-24 ✓ sig. Cluster 260 →
Bilirubin metabolism disease Lucey-driscoll syndrome
8 genes
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8 of 8 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.571 0.889 5.69e-26 1.45e-24 ✓ sig. Cluster 260 →
Darier disease Rothmund-thomson syndrome
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.571 0.889 5.69e-26 1.45e-24 ✓ sig. Cluster 80 →
Benign pemphigus Rothmund-thomson syndrome
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.571 0.889 5.69e-26 1.45e-24 ✓ sig. Cluster 80 →
Intellectual developmental disorder, x-linked Partington syndrome
12 genes
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12 of 12 corroborated by 2+ sources
CASK(2), ARX(6), AP1S2(2), RPL10(4), BRWD3(5), LAS1L(2), KDM5C(3), NONO(3), DDX3X(5), PAK3(4), USP9X(5), STEEP1(5)
0.130 0.857 5.80e-26 1.48e-24 ✓ sig. —
Lewy body disease Parkinson disease
34 genes
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21 of 34 corroborated by 2+ sources
KANSL1(1), INS(2), MCCC1(1), GFAP(2), APOE(1), ELOVL7(1), IGF2(2), KRTCAP2(1), NTRK2(3), PTPRD(1), IGF1R(2), IGF2R(2) +22 more
0.058 0.358 5.81e-26 1.48e-24 ✓ sig. —
Congenital ichthyosis Ichthyosis
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(3), KRT1(2), ABCA12(4), ALOX12B(3), ALOXE3(3), CYP4F22(3), PNPLA1(3), ST14(3), CERS3(3)
0.429 0.692 6.10e-26 1.55e-24 ✓ sig. Cluster 233 →
Maturity-onset diabetes of the young (mody) monogenic diabetes
9 genes
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9 of 9 corroborated by 2+ sources
INS(6), RFX6(2), ABCC8(4), HNF4A(6), KCNJ11(7), GCK(7), HNF1A(6), PDX1(7), NEUROD1(6)
0.360 0.900 6.10e-26 1.55e-24 ✓ sig. Cluster 36 →
Melas syndrome Postaxial polydactyly
10 genes
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5 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.333 0.556 7.46e-26 1.89e-24 ✓ sig. Cluster 32 →
Atrophic macular degeneration Macular degeneration
16 genes
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10 of 16 corroborated by 2+ sources
CFI(3), APOE(3), C2(3), C3(3), RAD51B(1), CFB(3), CETP(1), CFH(3), HERPUD1(1), RDH5(1), ARMS2(3), C9(3) +4 more
0.148 0.286 8.72e-26 2.21e-24 ✓ sig. Cluster 187 →
Lung disease Pulmonary fibrosis
21 genes
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16 of 21 corroborated by 2+ sources
CAT(2), SERPINA1(3), ACE(2), SERPINE1(1), IL1A(1), IL1B(2), NFE2L2(2), TNF(2), PTGS2(2), PDGFA(2), TGFB1(2), CSF3(2) +9 more
0.112 0.208 9.96e-26 2.52e-24 ✓ sig. Cluster 119 →
Connective tissue disease Marfan syndrome
17 genes
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14 of 17 corroborated by 2+ sources
COL2A1(1), FBN1(7), NOTCH1(3), COL5A1(2), FBN2(2), PRKG1(2), FLNA(1), SMAD3(2), ACTA2(3), COL1A1(2), COL3A1(2), MYH11(2) +5 more
0.118 0.395 1.00e-25 2.53e-24 ✓ sig. Cluster 12 →
Colorectal neoplasms Urinary bladder neoplasms
32 genes
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FGFR3(1), TP53(1), ARID1A(1), EGFR(1), ERCC2(1), ESR2(1), SRC(1), ACHE(1), BCL2(1), IGFBP3(1), MTHFR(1), PON1(1) +20 more
0.080 0.225 1.29e-25 3.26e-24 ✓ sig. Cluster 5 →
Color vision deficiency Schizophrenia
285 genes
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115 of 285 corroborated by 2+ sources
SOX5(2), HMGA2(1), TBX1(2), CUL9(1), WWOX(2), LMBR1(1), PDE4D(2), ZSWIM6(1), PIK3R1(1), DOCK6(1), RBPJ(1), CACNA1D(1) +273 more
0.088 0.295 1.32e-25 3.33e-24 ✓ sig. Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.