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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ciliary dyskinesia, with or without situs inversus Congenital nasopharyngeal atresia
10 genes
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DNAH5(1), CCDC40(1), DNAH11(1), DNAI1(1), RSPH4A(1), DNAAF3(1), DNAAF19(1), DNAAF4(1), DRC1(1), ODAD3(1)
0.313 0.909 1.60e-27 4.44e-26 ✓ sig. Cluster 9 →
Bradycardia Hypotension
14 genes
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AGT(1), CRH(1), GCG(1), PRL(1), PDYN(1), POMC(1), TAC1(1), DRD2(1), KNG1(1), EDN1(1), ADORA1(1), EDN3(1) +2 more
0.175 0.538 1.89e-27 5.23e-26 ✓ sig. Cluster 13 →
Cystic fibrosis Lung disease
19 genes
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12 of 19 corroborated by 2+ sources
SERPINA1(4), MPO(2), GSTT1(1), IL1B(1), TNF(2), GSTM1(1), PTGS2(2), TGFB1(5), SCNN1A(2), MIF(3), MUC4(1), ADRB2(2) +7 more
0.131 0.306 1.89e-27 5.23e-26 ✓ sig. Cluster 119 →
Colonic neoplasms Stomach neoplasms
39 genes
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1 of 39 corroborated by 2+ sources
HNF1B(1), DPYD(1), TP53(1), CDX2(1), EGFR(1), FBP1(1), PRR5-ARHGAP8(1), SYMPK(2), IL1B(1), MTHFR(1), PPARG(1), SOD2(1) +27 more
0.083 0.192 2.08e-27 5.74e-26 ✓ sig. Cluster 5 →
Cryptogenic west syndrome Infantile spasms
8 genes
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CRH(1), POMC(1), STXBP1(1), TSC2(1), TSC1(1), UPB1(1), HSD17B4(1), MC2R(1)
0.667 1.000 2.11e-27 5.80e-26 ✓ sig. Cluster 328 →
Idiopathic basal ganglia calcification Primary familial brain calcification
8 genes
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8 of 8 corroborated by 2+ sources
PDGFRB(6), XPR1(6), PDGFB(7), JAM2(6), SLC20A2(5), CMPK2(5), MYORG(6), NAA60(5)
0.667 1.000 2.11e-27 5.80e-26 ✓ sig. Cluster 390 →
Posterior polar cataract Posterior subcapsular cataract
8 genes
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8 of 8 corroborated by 2+ sources
PITX3(3), EPHA2(3), CHMP4B(3), CRYAB(3), MIP(2), PANK4(3), CRYBA1(3), GJA3(2)
0.667 1.000 2.11e-27 5.80e-26 ✓ sig. Cluster 43 →
Cone dystrophy Macular dystrophy
14 genes
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3 of 14 corroborated by 2+ sources
ABCA4(1), CNGA3(1), CNGB3(3), PRPH2(2), CACNA1F(1), PDE6B(1), USH2A(1), CRB1(1), GUCY2D(1), CERKL(1), GUCA1A(7), RPGR(1) +2 more
0.203 0.368 2.22e-27 6.08e-26 ✓ sig. Cluster 7 →
Coronary artery disease Venous thromboembolism
90 genes
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14 of 90 corroborated by 2+ sources
JMJD1C(1), ZFPM2(1), SH2B3(3), ADGRL2(1), ADH5(1), BTNL2(2), CPS1(1), CUX2(1), DCHS2(1), FADS1(1), FADS2(1), HINT1(1) +78 more
0.064 0.263 2.68e-27 7.35e-26 ✓ sig. Cluster 78 →
Pharyngeal disorder Respiratory system disease
19 genes
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IKZF1(1), TET2(1), TNFRSF13B(1), ABO(1), IL7R(1), ITGAL(1), LTBR(1), NFKB1(1), HORMAD2(1), DYSF(1), ADSS1(1), SLC20A2(1) +7 more
0.075 0.613 2.90e-27 7.95e-26 ✓ sig. —
Congenital nonbullous ichthyosiform erythroderma Lamellar ichthyosis
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(3), SDR9C7(3), SULT2B1(3), ABCA12(4), ALOX12B(4), ALOXE3(4), PNPLA1(2), NIPAL4(3), CERS3(2)
0.500 0.750 3.29e-27 9.00e-26 ✓ sig. Cluster 233 →
Lipodystrophy Partial lipodystrophy
9 genes
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9 of 9 corroborated by 2+ sources
AKT2(3), PPARG(4), CAV1(6), LMNA(7), ADRA2A(4), LMNB2(4), CIDEC(3), PLIN1(3), LIPE(3)
0.450 0.900 3.63e-27 9.92e-26 ✓ sig. Cluster 71 →
Congenital muscular dystrophy Limb girdle muscular dystrophy
12 genes
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11 of 12 corroborated by 2+ sources
GMPPB(4), CRPPA(4), LMNA(4), DYSF(6), LAMA2(1), POMT1(4), POMT2(4), POMGNT1(5), CAPN3(7), FKRP(6), FKTN(5), POMK(4)
0.245 0.545 4.67e-27 1.27e-25 ✓ sig. Cluster 14 →
Lung neoplasms Obstructive airway disease
28 genes
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28 of 28 corroborated by 2+ sources
CHRNA7(2), RTEL1(2), TERT(2), TP53(2), SERPINA1(2), ACE(2), CYP1A2(2), GSTP1(2), GSTT1(2), HMOX1(2), IL1B(2), TLR4(2) +16 more
0.086 0.280 4.75e-27 1.30e-25 ✓ sig. —
Non-small cell lung carcinoma Skin cancer
21 genes
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3 of 21 corroborated by 2+ sources
TERT(2), BNC2(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), TRPS1(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), BACH2(1) +9 more
0.118 0.253 5.38e-27 1.46e-25 ✓ sig. Cluster 29 →
Anterior segment dysgenesis Anterior segment mesenchymal dysgenesis
10 genes
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8 of 10 corroborated by 2+ sources
PITX3(5), COL4A1(1), FOXC1(5), FOXD3(1), PAX6(3), PITX2(4), FOXE3(4), CYP1B1(4), PXDN(5), CPAMD8(6)
0.357 0.714 5.55e-27 1.51e-25 ✓ sig. —
Congenital cartilage disorder Connective tissue disease
16 genes
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HSPG2(1), SLC26A2(1), COL2A1(1), COL11A1(1), DYM(1), FLNB(1), TRPV4(1), FLNA(1), COL11A2(1), COMP(1), COL9A1(1), COL9A2(1) +4 more
0.121 0.533 5.67e-27 1.54e-25 ✓ sig. —
Accessory skin tag Rothmund-thomson syndrome
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.615 1.000 6.33e-27 1.71e-25 ✓ sig. Cluster 80 →
Keratinocyte carcinoma Vitiligo
21 genes
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9 of 21 corroborated by 2+ sources
PIK3R1(3), FOXP1(3), HERC2(1), HLA-DQA1(2), HLA-DRB1(2), SPMIP7(1), RALY(1), PPARGC1B(1), IRF4(1), CCR6(3), BACH2(3), CTLA4(2) +9 more
0.115 0.273 7.13e-27 1.93e-25 ✓ sig. —
Duodenal ulcer Peptic ulcer disease
17 genes
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3 of 17 corroborated by 2+ sources
CCKBR(1), FUT2(1), MECOM(1), PRKAA1(1), TTC33(1), ABO(3), JRK(1), PSCA(3), PLCL2(1), MUC1(1), GAST(3), SLC22A3(1) +5 more
0.120 0.459 7.21e-27 1.95e-25 ✓ sig. —
Dementia Major depressive disorder
171 genes
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33 of 171 corroborated by 2+ sources
HNF1B(1), DMRT1(1), ZFPM2(1), APP(2), PSEN1(1), ACE(2), ADAMTS2(1), ADCY8(2), ADRA1A(2), ADRA1D(1), ANK3(1), APOE(1) +159 more
0.072 0.290 8.27e-27 2.23e-25 ✓ sig. Cluster 2 →
Progressive myoclonic epilepsy progressive myoclonus epilepsy
9 genes
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9 of 9 corroborated by 2+ sources
SCARB2(5), PRICKLE1(5), SEMA6B(2), GOSR2(6), NUS1(2), SERPINI1(2), KCTD7(6), KCNC1(5), CERS1(7)
0.360 1.000 9.77e-27 2.63e-25 ✓ sig. Cluster 329 →
Left ventricular disease Wolff-parkinson-white syndrome
16 genes
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8 of 16 corroborated by 2+ sources
PRDM16(6), ABCC9(1), JUP(1), PRKAG2(5), DSP(1), MYH6(1), MYH11(1), NDE1(1), TBX20(2), LMNA(2), RYR2(1), MYBPC3(6) +4 more
0.157 0.314 1.16e-26 3.13e-25 ✓ sig. Cluster 4 →
Irritable bowel syndrome Neurotic disorder
37 genes
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RERE(1), CADM2(1), CELF4(1), CTSB(1), DCC(1), ERBB4(1), FOXP2(1), GLIS3(1), RBMS3(1), SORCS3(1), TCF4(1), TLR4(1) +25 more
0.069 0.276 1.32e-26 3.56e-25 ✓ sig. Cluster 2 →
Atherosclerosis Cerebrovascular disorder
21 genes
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16 of 21 corroborated by 2+ sources
APOA1(2), AGT(2), APOE(3), HDAC9(3), LDLR(3), SMARCA4(1), ICAM1(2), MTHFR(1), TNF(2), ATXN2(1), IL6(3), PLAT(2) +9 more
0.115 0.250 1.54e-26 4.15e-25 ✓ sig. Cluster 307 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.