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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hashimoto disease Thyroid disease
15 genes
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2 of 15 corroborated by 2+ sources
SH2B3(1), FAM76B(1), HLA-DQA1(1), ICOS(1), ATXN2(1), BACH2(1), CTLA4(3), IL2RA(1), PTPN22(1), TG(3), STAT4(1), CD69(1) +3 more
0.227 0.556 2.15e-31 6.86e-30 ✓ sig. Cluster 39 →
Brain ischemia Pulmonary fibrosis
22 genes
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22 of 22 corroborated by 2+ sources
CAT(2), ACE(2), PLAU(2), HSPA1B(2), IGF1(2), IL1A(2), IL1B(2), PARP1(2), STAT3(2), TNF(2), IL6(2), PTGS2(2) +10 more
0.141 0.314 2.21e-31 7.05e-30 ✓ sig. —
Hyperlipoproteinemia Ischemic heart disease
21 genes
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12 of 21 corroborated by 2+ sources
AMPD1(1), ABCA1(2), ABCG8(1), APOB(2), APOE(5), EPHX2(1), LDLR(2), LIPC(2), NOS3(1), ADRB3(1), HMGCR(2), IRS1(1) +9 more
0.111 0.525 2.46e-31 7.84e-30 ✓ sig. —
Skin cancer Vitiligo
24 genes
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9 of 24 corroborated by 2+ sources
FADS1(1), FADS2(1), FAM76B(1), FOXP1(3), HERC2(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), RALY(1), IRF4(1), CCR6(3), BACH2(3) +12 more
0.129 0.289 2.50e-31 7.96e-30 ✓ sig. —
Atherosclerosis Ischemic heart disease
29 genes
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24 of 29 corroborated by 2+ sources
APOA1(2), ABCA1(2), APOB(2), APOE(3), LDLR(3), SERPINE1(2), VEGFA(2), NOS3(2), AGER(2), ESR1(2), MTHFR(1), PON1(2) +17 more
0.111 0.244 2.73e-31 8.67e-30 ✓ sig. —
Congenital stationary night blindness Oguchi disease
10 genes
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10 of 10 corroborated by 2+ sources
CACNA1F(2), PDE6B(4), TRPM1(3), RHO(4), GNB3(3), GNAT1(3), GRM6(3), LRIT3(3), NYX(3), SLC24A1(3)
0.588 0.833 3.21e-31 1.02e-29 ✓ sig. Cluster 151 →
Graves disease Thyroid disease
20 genes
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10 of 20 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(2), ICOS(1), VEGFA(2), HLA-DQB1(2), CCR6(1), BACH2(1), CEP43(1), CTLA4(3), IL2RA(1), PTPN22(3), TG(3) +8 more
0.150 0.377 3.24e-31 1.03e-29 ✓ sig. Cluster 39 →
Duodenal ulcer Gastric ulcer
16 genes
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4 of 16 corroborated by 2+ sources
CCKBR(1), FUT2(1), MECOM(1), PRKAA1(1), TTC33(1), PTGS2(2), ABO(3), NOS2(2), JRK(1), PSCA(3), PLCL2(1), ZNF800(1) +4 more
0.213 0.432 3.85e-31 1.22e-29 ✓ sig. —
Cataract Congenital total cataract
16 genes
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16 of 16 corroborated by 2+ sources
LSS(6), CRYBB2(6), PGRMC1(2), CRYAA(6), EPHA2(6), GJA8(5), DNMBP(6), HSF4(5), LIM2(6), MIP(6), GCNT2(6), FYCO1(5) +4 more
0.079 1.000 3.88e-31 1.23e-29 ✓ sig. Cluster 43 →
Ciliary dyskinesia, with or without situs inversus Polynesian bronchiectasis
9 genes
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MBL2(1), DNAH5(1), CCDC40(1), DNAH11(1), DNAI1(1), DNAAF3(1), DNAAF19(1), DNAAF4(1), DRC1(1)
0.750 1.000 4.11e-31 1.30e-29 ✓ sig. Cluster 9 →
Cone-rod dystrophy Stargardt disease
16 genes
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6 of 16 corroborated by 2+ sources
ABCA4(7), CNGB3(2), PRPH2(4), CRB1(1), CRX(8), PROM1(6), RPE65(1), GPHN(1), EYS(1), OPA1(1), KCNV2(1), CERKL(1) +4 more
0.184 0.571 4.14e-31 1.30e-29 ✓ sig. Cluster 7 →
Biliary cholangitis Sclerosing cholangitis
34 genes
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12 of 34 corroborated by 2+ sources
SH2B3(1), ETS1(1), HLA-DQA1(2), HLA-DRA(1), IKZF1(1), ATXN2(1), HLA-DQB1(1), ATG5(1), CCR6(1), CCL20(1), CD226(1), CEP43(1) +22 more
0.099 0.231 4.27e-31 1.34e-29 ✓ sig. —
Developmental and epileptic encephalopathy Seizures
33 genes
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29 of 33 corroborated by 2+ sources
FOXG1(3), ATP1A3(5), ABAT(4), HCN1(5), KCNQ2(7), RBFOX1(2), SCN8A(7), SLC6A1(2), GABRG2(6), CHRNA4(2), GABRA1(5), GRIA3(1) +21 more
0.100 0.234 4.89e-31 1.54e-29 ✓ sig. —
Hypertension Kidney disease
108 genes
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54 of 108 corroborated by 2+ sources
COL4A5(1), INS(2), APOA1(2), TERT(3), SPI1(1), COL4A4(1), ACE(2), ACTN4(2), AGT(3), ANXA1(2), BCAS3(1), CHRM3(1) +96 more
0.074 0.254 5.45e-31 1.71e-29 ✓ sig. —
Graves disease Vitiligo
25 genes
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14 of 25 corroborated by 2+ sources
IFIH1(3), BTNL2(2), FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), RHOH(1), TNF(2), HLA-DQB1(2), VDR(1), IFNG(2), CCR6(3) +13 more
0.124 0.253 6.00e-31 1.88e-29 ✓ sig. Cluster 39 →
Insomnia Willis-ekbom disease
68 genes
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3 of 68 corroborated by 2+ sources
SMPD1(1), ADGRB3(1), ASB3(1), ATP2C1(1), BTBD9(3), CAMTA1(1), CNTNAP5(1), CTNNA3(1), DAB1(1), EXD3(1), GRIA1(1), GRIK3(1) +56 more
0.057 0.356 6.50e-31 2.03e-29 ✓ sig. Cluster 2 →
Thyroid disease Vitiligo
21 genes
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8 of 21 corroborated by 2+ sources
SH2B3(3), FAM76B(1), HLA-DQA1(2), ICOS(1), ATXN2(1), HLA-DQB1(2), NEK6(1), CCR6(3), BACH2(3), CTLA4(2), IL2RA(1), PHTF1(1) +9 more
0.132 0.396 6.63e-31 2.07e-29 ✓ sig. Cluster 39 →
Gilbert syndrome Perinatal disease
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(5), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.750 0.900 7.47e-31 2.33e-29 ✓ sig. Cluster 260 →
Oropharyngeal cancer Upper aerodigestive tract neoplasm
23 genes
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HLA-DQA1(1), HLA-DRB1(1), LAMC3(1), RBFOX1(1), RERGL(1), IL1A(1), IL1B(1), CCDC192(1), HLA-DQB1(1), CTLA4(1), MUC22(1), MACO1(1) +11 more
0.116 0.383 9.24e-31 2.88e-29 ✓ sig. —
Idiopathic pulmonary fibrosis Interstitial lung disease
20 genes
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13 of 20 corroborated by 2+ sources
RTEL1(4), TERT(6), DEPTOR(1), MAPT(1), IVD(1), DSP(4), MUC5B(6), AKAP13(1), MUC5AC(1), SFTPC(5), SPDL1(1), STN1(4) +8 more
0.155 0.303 9.28e-31 2.88e-29 ✓ sig. —
Congenital ichthyosis Lamellar ichthyosis
10 genes
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10 of 10 corroborated by 2+ sources
TGM1(4), SDR9C7(3), ABCA12(6), ALOX12B(4), ALOXE3(4), CYP4F22(5), PNPLA1(3), NIPAL4(4), LIPN(5), CERS3(3)
0.556 0.769 1.39e-30 4.31e-29 ✓ sig. Cluster 233 →
Congenital myasthenic syndrome Postsynaptic congenital myasthenic syndrome
11 genes
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11 of 11 corroborated by 2+ sources
SCN4A(5), AGRN(5), CHRNE(5), RAPSN(5), CHRND(5), CHRNA1(5), MUSK(5), CHRNB1(6), LRP4(6), COL13A1(5), DOK7(6)
0.355 0.917 1.44e-30 4.46e-29 ✓ sig. Cluster 34 →
Liver cirrhosis Liver disease
36 genes
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25 of 36 corroborated by 2+ sources
SERPINA1(3), APOC1(1), APOE(1), ATP7B(2), CYP1A2(2), NPC1(2), SERPINE1(2), SPP1(2), TRIB1(1), HFE(1), ALDH2(2), GSTT1(1) +24 more
0.093 0.229 1.53e-30 4.73e-29 ✓ sig. Cluster 226 →
Congenital ichthyosiform erythroderma Congenital nonbullous ichthyosiform erythroderma
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(3), SDR9C7(2), SULT2B1(2), ABCA12(3), ALOX12B(3), ALOXE3(3), PNPLA1(3), NIPAL4(3), CERS3(3)
0.692 1.000 1.64e-30 5.08e-29 ✓ sig. Cluster 233 →
Long qt syndrome Polymorphic catecholaminergic ventricular tachycardia
14 genes
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11 of 14 corroborated by 2+ sources
PKP2(1), CALM1(6), KCNJ2(2), CACNA1C(6), TECRL(2), CALM2(6), CALM3(7), CASQ2(2), RYR2(2), SCN5A(8), TRDN(5), MYBPC3(1) +2 more
0.135 0.933 1.85e-30 5.69e-29 ✓ sig. Cluster 4 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.