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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Craniofacial abnormalities Growth disorder
14 genes
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10 of 14 corroborated by 2+ sources
RAI1(2), FGD1(2), LTBP3(2), ATRX(2), CNTN4(1), IDH2(2), SH3PXD2B(1), TBX15(2), AHR(2), DNMT3A(2), ERCC6(2), LPAR1(2) +2 more
0.079 0.400 1.28e-19 2.39e-18 ✓ sig. —
Aortic dissection Thoracic aortic aneurysm and aortic dissection
9 genes
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7 of 9 corroborated by 2+ sources
FBN1(5), SMAD3(6), COL1A1(2), FOXE3(5), COL3A1(1), TGFBR1(6), TGFBR2(6), LOX(5), SRFBP1(1)
0.176 0.500 1.25e-19 2.34e-18 ✓ sig. —
Atrophic macular degeneration Glaucoma
18 genes
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1 of 18 corroborated by 2+ sources
CFI(1), ABCA1(1), ALDH1A2(1), APOE(2), C2(1), C3(1), RAD51B(1), CFB(1), TGFBR1(1), SYN3(1), CETP(1), CFH(1) +6 more
0.066 0.321 1.23e-19 2.31e-18 ✓ sig. —
Spastic ataxia Spastic paraplegia
16 genes
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15 of 16 corroborated by 2+ sources
SETX(1), SPG11(4), PNPLA6(4), CYP7B1(4), VAMP1(5), KIF1C(5), SACS(3), SPG7(4), SPAST(4), KIF1A(5), AMPD2(4), FA2H(4) +4 more
0.091 0.229 1.15e-19 2.16e-18 ✓ sig. —
Central nervous system cancer Scoliosis
110 genes
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3 of 110 corroborated by 2+ sources
AKAP6(1), ANK3(1), ANO4(1), C6orf118(1), CDKAL1(1), CSMD1(1), CTNNA3(1), DCC(1), DGKB(1), EGFR(1), EPHA4(1), FKBP1C(1) +98 more
0.070 0.168 1.15e-19 2.15e-18 ✓ sig. —
Epidermolysis bullosa Junctional epidermolysis bullosa
8 genes
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8 of 8 corroborated by 2+ sources
COL7A1(6), PLEC(8), LAMB3(6), KRT5(7), ITGB4(7), ITGA6(7), KRT14(7), KLHL24(6)
0.250 0.444 1.13e-19 2.12e-18 ✓ sig. —
Cholelithiasis Pulmonary fibrosis
19 genes
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19 of 19 corroborated by 2+ sources
CAT(2), SERPINA1(2), AGT(2), SERPINE1(2), IGF1(2), IL1B(2), NFE2L2(2), TNF(2), IL6(2), HMGB1(2), TGFB1(2), ACTA2(2) +7 more
0.083 0.178 1.12e-19 2.11e-18 ✓ sig. —
Muscle eye brain disease Muscular dystrophy
9 genes
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9 of 9 corroborated by 2+ sources
DAG1(2), GMPPB(3), LARGE1(2), CRPPA(2), POMT1(3), POMT2(3), POMGNT1(3), FKRP(3), FKTN(3)
0.155 0.600 1.12e-19 2.11e-18 ✓ sig. Cluster 14 →
Crigler-najjar syndrome Gallstones
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(7), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.072 1.000 1.06e-19 2.00e-18 ✓ sig. —
Amphetamine or sympathomimetic abuse Substance-induced psychosis
10 genes
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10 of 10 corroborated by 2+ sources
GSTP1(2), HTR6(2), SNCA(2), ADORA2A(2), AKT1(2), GRM2(2), NPY1R(2), OPRM1(2), PICK1(2), SLC6A3(2)
0.118 0.588 1.01e-19 1.90e-18 ✓ sig. Cluster 13 →
Intrahepatic cholestasis of pregnancy Liver disease
12 genes
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5 of 12 corroborated by 2+ sources
SERPINA1(3), ABCG8(1), TNF(2), GCKR(1), ABCB1(1), NR1H4(3), HNF4A(1), CYP7A1(1), ABCB11(2), ABCB4(4), UBXN2B(1), ENPP7(1)
0.072 0.600 9.68e-20 1.83e-18 ✓ sig. —
Coronary artery disease Osteoarthritis
126 genes
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36 of 126 corroborated by 2+ sources
SOX5(1), NFIA(1), COL2A1(2), SERPINA1(1), ADARB2(1), ALDH1A2(2), APOC1(1), APOE(3), ARHGAP15(1), BCAS3(1), BLTP3A(1), BNC2(1) +114 more
0.072 0.173 9.20e-20 1.74e-18 ✓ sig. —
46,xy sex reversal Swyer syndrome
6 genes
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5 of 6 corroborated by 2+ sources
NR5A1(1), SRY(2), CBX2(2), DHX37(2), MAP3K1(2), NR0B1(2)
0.500 0.857 7.95e-20 1.50e-18 ✓ sig. Cluster 38 →
Lung neoplasms Mesothelioma
26 genes
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1 of 26 corroborated by 2+ sources
WT1(3), APOA1(1), TP53(1), EGFR(1), SPP1(1), ESR1(1), IL6(1), EPHX1(1), FHIT(1), GSTM1(1), EFEMP1(1), EGR1(1) +14 more
0.070 0.179 7.83e-20 1.48e-18 ✓ sig. Cluster 5 →
Anxiety disorder Depression
27 genes
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21 of 27 corroborated by 2+ sources
APP(2), CTNND2(1), DISC1(2), FOXP2(2), HTR1A(1), NTRK2(2), CRH(2), NPY(2), TNF(2), DRD2(3), DRD4(2), GAD1(1) +15 more
0.068 0.185 7.52e-20 1.42e-18 ✓ sig. Cluster 2 →
autosomal dominant nonsyndromic hearing loss Isolated sensorineural deafness
9 genes
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9 of 9 corroborated by 2+ sources
COL11A1(2), LMX1A(2), ATP2B2(2), RIPOR2(2), PDE1C(2), ATP11A(2), ABCC1(2), CD164(2), PLS1(2)
0.075 1.000 7.23e-20 1.37e-18 ✓ sig. Cluster 26 →
Autoimmune hepatitis Hypersensitivity
12 genes
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12 of 12 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), IL10(2), IL4(2), IL6(2), HLA-DQB1(3), TGFB1(2), IFNG(2), CCL2(2), CXCL1(2), IL13(2), IL18(2)
0.124 0.316 7.12e-20 1.35e-18 ✓ sig. Cluster 16 →
autosomal dominant nonsyndromic hearing loss Nonsyndromic hearing loss
9 genes
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9 of 9 corroborated by 2+ sources
COL11A1(2), LMX1A(4), ATP2B2(3), RIPOR2(5), PDE1C(2), ATP11A(2), ABCC1(2), CD164(4), PLS1(3)
0.076 1.000 6.68e-20 1.27e-18 ✓ sig. Cluster 26 →
Short qt syndrome Ventricular fibrillation
8 genes
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5 of 8 corroborated by 2+ sources
CACNB2(1), TRPM4(1), KCNJ2(6), CACNA1C(3), KCNH2(5), SCN5A(3), CACNA2D1(2), VCL(1)
0.200 0.727 6.35e-20 1.21e-18 ✓ sig. —
Obesity Osteoarthritis
130 genes
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39 of 130 corroborated by 2+ sources
SOX5(1), WWOX(1), ACAN(1), AGAP1(1), AKAP1(3), ALDH1A2(2), APOC1(2), APOE(3), ASB3(1), BCAS3(1), CCDC33(1), CCDC91(1) +118 more
0.072 0.178 6.22e-20 1.18e-18 ✓ sig. Cluster 2 →
Diabetes mellitus type 2 Scoliosis
326 genes
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35 of 326 corroborated by 2+ sources
COMT(1), COL2A1(2), PDE4D(1), SH2B3(1), ETV6(1), ADK(1), GBE1(1), IFIH1(1), SERPINF2(1), ADARB2(1), ADGRB3(1), ADGRL2(1) +314 more
0.086 0.316 5.55e-20 1.06e-18 ✓ sig. Cluster 2 →
Congenital heart defects Tetralogy of fallot
16 genes
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15 of 16 corroborated by 2+ sources
TBX1(5), GATA4(6), JAG1(6), MTHFR(2), FLNA(2), MYRF(2), MYH6(2), MYH7(2), HAND2(2), GATA6(6), ABL1(2), NIPBL(2) +4 more
0.095 0.229 4.88e-20 9.30e-19 ✓ sig. Cluster 111 →
Ciliary dyskinesia Situs ambiguus
11 genes
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10 of 11 corroborated by 2+ sources
DNAH5(7), DNAH6(2), CCDC39(7), CCDC40(6), DNAAF1(6), CFAP298-TCP10L(1), DNAAF11(7), CFAP298(8), ODAD4(7), CFAP300(7), DNAH9(6)
0.109 0.524 4.86e-20 9.27e-19 ✓ sig. —
Isolated sensorineural deafness Meniere disease
16 genes
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COL11A1(1), MYO1C(1), OTOGL(1), PCDH15(1), OTOG(1), TNC(1), MYO6(1), TRIOBP(1), CDH23(1), MYO7A(1), WFS1(1), MYH14(1) +4 more
0.094 0.239 4.62e-20 8.83e-19 ✓ sig. Cluster 26 →
Cholecystolithiasis Liver disease
22 genes
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7 of 22 corroborated by 2+ sources
SERPINA1(3), ABCG8(2), APOE(1), SERPINA2(1), GCKR(1), CCK(2), ABCB1(1), HNF4A(1), UGT1A10(1), UGT1A8(1), UGT1A9(1), CYP7A1(1) +10 more
0.079 0.155 4.32e-20 8.26e-19 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.