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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Obstructive pulmonary disease Open angle glaucoma
49 genes
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5 of 49 corroborated by 2+ sources
HMGA2(1), RERE(1), ZFPM2(1), ANTXR1(1), APOE(2), BCAS3(1), BNC2(1), CADM2(1), CCDC91(1), COL6A3(2), DGKB(1), GLIS3(1) +37 more
0.056 0.133 2.78e-15 4.02e-14 ✓ sig. —
Diabetic eye disease Gestational diabetes
11 genes
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2 of 11 corroborated by 2+ sources
CDKAL1(2), HLA-DQB3(1), TCF7L2(2), HLA-DQB1(1), GCKR(1), KCNQ1(1), SLC30A8(1), CCND2(1), IGF2BP2(1), PAX4(1), ADCY5(1)
0.086 0.229 2.74e-15 3.97e-14 ✓ sig. Cluster 73 →
Breast cancer Uterine fibroid
63 genes
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3 of 63 corroborated by 2+ sources
CASZ1(1), CHEK2(1), RTEL1(1), TERT(1), TP53(4), CSMD1(1), CTNNA2(1), ETV1(1), EXO1(1), LRRN2(1), MDM4(1), NAALADL2(1) +51 more
0.048 0.206 2.64e-15 3.83e-14 ✓ sig. Cluster 20 →
Hyperalgesia Hyperemia
8 genes
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8 of 8 corroborated by 2+ sources
AGT(2), IL1B(2), TAC1(2), PTGS2(2), KNG1(2), BDKRB2(2), NOS2(2), CNR2(2)
0.083 0.571 2.64e-15 3.82e-14 ✓ sig. —
Bronchial hyperreactivity Hyperalgesia
8 genes
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8 of 8 corroborated by 2+ sources
NGF(2), TAC1(2), CCL2(2), IL1RN(2), PTGS1(2), VIP(2), TRPA1(2), CALCA(2)
0.083 0.571 2.64e-15 3.82e-14 ✓ sig. —
Cardiomegaly Fatty liver
13 genes
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13 of 13 corroborated by 2+ sources
LEP(2), PPARA(2), SOD2(2), TNF(2), POMC(2), AKT1(2), CYP1B1(2), CYP2E1(2), HTR2B(2), PPARD(2), UCP2(2), CEBPB(2) +1 more
0.079 0.155 2.63e-15 3.82e-14 ✓ sig. —
Colobomatous microphthalmia Congenital cystic eyeball
5 genes
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5 of 5 corroborated by 2+ sources
RAX(2), VSX2(2), ALDH1A3(2), GDF6(2), GDF3(2)
0.294 0.833 2.50e-15 3.63e-14 ✓ sig. Cluster 56 →
Congenital cartilage disorder Marshall syndrome
7 genes
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7 of 7 corroborated by 2+ sources
SLC26A2(2), COL2A1(2), COL11A1(6), COL11A2(2), COL9A1(2), COL9A2(2), COL9A3(2)
0.163 0.368 2.48e-15 3.61e-14 ✓ sig. —
Delirium, dementia, and cognitive disorders Seizures
13 genes
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13 of 13 corroborated by 2+ sources
INS(2), AGT(2), APOE(2), BCHE(2), BDNF(2), CRH(2), DRD2(2), DRD3(2), PTGS2(2), CNR1(2), SLC1A1(2), TSC1(2) +1 more
0.070 0.232 2.45e-15 3.56e-14 ✓ sig. —
Hypoplastic left heart syndrome Tetralogy of fallot
9 genes
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9 of 9 corroborated by 2+ sources
TBX1(5), NOTCH1(2), HAND1(2), RBFOX2(2), MYH6(2), TBX20(2), NKX2-5(6), MYH7(2), CFAP53(2)
0.073 0.500 2.23e-15 3.25e-14 ✓ sig. Cluster 111 →
Ischemic stroke Thromboembolism
7 genes
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7 of 7 corroborated by 2+ sources
PLAU(2), F2(2), PLAT(2), F5(2), PROC(2), PROS1(2), F7(2)
0.123 0.583 2.23e-15 3.25e-14 ✓ sig. Cluster 55 →
Myeloid leukemia Urinary bladder neoplasms
18 genes
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3 of 18 corroborated by 2+ sources
TERT(2), INPP4B(1), KMT2C(1), NECTIN2(1), BCL2(1), FAS(1), STAT3(1), CSF3(1), JAK2(2), KRAS(2), MYC(1), NQO1(1) +6 more
0.065 0.127 2.21e-15 3.22e-14 ✓ sig. —
genetic developmental and epileptic encephalopathy West syndrome
8 genes
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8 of 8 corroborated by 2+ sources
WWOX(2), SIK1(2), ARX(2), SCN1A(2), DNM1(2), STXBP1(2), PLCB1(2), SPTAN1(2)
0.136 0.267 2.18e-15 3.19e-14 ✓ sig. —
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency Cytochrome c oxidase deficiency
5 genes
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5 of 5 corroborated by 2+ sources
SCO2(5), COA5(5), COA6(5), COX15(5), SURF1(2)
0.238 1.000 2.15e-15 3.14e-14 ✓ sig. Cluster 50 →
Butterfly-shaped pigmentary macular dystrophy Patterned macular dystrophy
4 genes
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4 of 4 corroborated by 2+ sources
PRPH2(5), CTNNA1(5), OTX2(3), MAPKAPK3(3)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. —
Glycinuria with/without oxalate urolithiasis Iminoglycinuria
4 genes
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3 of 4 corroborated by 2+ sources
SLC36A1(1), SLC36A2(6), SLC6A19(2), SLC6A20(3)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. —
Hereditary hyperekplexia Hyperexplexia hereditary
4 genes
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4 of 4 corroborated by 2+ sources
GPHN(4), SLC6A5(4), GLRA1(4), GLRB(3)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 379 →
Hyperekplexia Hyperexplexia hereditary
4 genes
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4 of 4 corroborated by 2+ sources
GPHN(4), SLC6A5(6), GLRA1(4), GLRB(5)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 379 →
Cleft eyelid Congenital iris coloboma
4 genes
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PAX6(1), FZD5(1), ABCB6(1), SALL2(1)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 272 →
Paroxysmal dyskinesia Paroxysmal dystonic choreoathetosis
4 genes
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3 of 4 corroborated by 2+ sources
SLC2A1(1), KCNJ10(2), PRRT2(2), KCNA1(2)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 58 →
Apert syndrome Congenital malformation syndromes predominantly affecting facial appearance
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 48 →
Apert syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 48 →
Conduction disorder of the heart Restrictive cardiomyopathy
7 genes
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1 of 7 corroborated by 2+ sources
DMD(1), DSP(1), CACNA1C(1), MYH6(1), FLNC(3), MYH7(1), TTN(1)
0.171 0.304 2.05e-15 3.02e-14 ✓ sig. Cluster 4 →
Perisylvian syndrome Polymicrogyria
6 genes
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5 of 6 corroborated by 2+ sources
CCND2(2), PI4KA(2), ADGRG1(3), SRPX2(2), TUBB2B(2), SCN3A(1)
0.200 0.600 2.00e-15 2.95e-14 ✓ sig. —
Delirium, dementia, and cognitive disorders Memory disorders
10 genes
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10 of 10 corroborated by 2+ sources
COMT(2), INS(2), APP(2), PSEN1(2), IGF2(2), MAPT(2), DRD2(2), SLC6A4(2), CNR1(2), HTR2A(2)
0.102 0.196 1.98e-15 2.91e-14 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.