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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Osteochondrodysplasias Spondyloepiphyseal dysplasia
6 genes
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6 of 6 corroborated by 2+ sources
HSPG2(2), COL2A1(8), TRPV4(3), GLB1(2), CHST3(6), TRAPPC2(6)
0.130 0.333 1.09e-12 1.32e-11 ✓ sig. —
Hereditary bundle branch system defect Ventricular fibrillation
5 genes
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1 of 5 corroborated by 2+ sources
TRPM4(1), DSP(1), NKX2-5(1), SCN5A(3), SCN1B(1)
0.128 0.714 1.09e-12 1.32e-11 ✓ sig. Cluster 4 →
Maturity-onset diabetes of the young Neonatal diabetes mellitus
5 genes
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5 of 5 corroborated by 2+ sources
INS(2), ABCC8(2), KCNJ11(2), GCK(2), PDX1(2)
0.192 0.385 1.10e-12 1.32e-11 ✓ sig. Cluster 36 →
Anxiety disorder Bipolar depression
14 genes
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11 of 14 corroborated by 2+ sources
SERPINA1(2), DISC1(2), HTR1A(1), NTRK2(2), PDE4B(2), THSD7A(2), GAD1(1), SLC6A4(3), CACNA1C(2), NCAM1(2), ADCY2(2), ITIH1(2) +2 more
0.059 0.133 1.11e-12 1.33e-11 ✓ sig. Cluster 2 →
Hereditary hearing loss Usher syndrome
8 genes
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8 of 8 corroborated by 2+ sources
PCDH15(7), CDH23(8), MYO7A(7), COCH(2), ESPN(5), OTOA(2), USH1C(7), WHRN(6)
0.092 0.182 1.11e-12 1.34e-11 ✓ sig. Cluster 26 →
Hashimoto disease Immune system disease
7 genes
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1 of 7 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(1), HLA-DRB1(1), ATXN2(1), CTLA4(3), PTPN22(1), STAT4(1)
0.104 0.259 1.12e-12 1.34e-11 ✓ sig. —
Saldino-noonan syndrome Short-rib thoracic dysplasia
5 genes
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5 of 5 corroborated by 2+ sources
NEK1(4), DYNC2H1(2), DYNC2I1(4), DYNC2I2(5), DYNLT2B(4)
0.172 0.500 1.17e-12 1.41e-11 ✓ sig. Cluster 22 →
Craniodiaphyseal dysplasia Short-rib thoracic dysplasia
5 genes
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5 of 5 corroborated by 2+ sources
IFT43(5), IFT140(4), IFT52(6), WDR19(6), WDR35(6)
0.172 0.500 1.17e-12 1.41e-11 ✓ sig. Cluster 22 →
Auditory neuropathy Nonsyndromic hearing loss
9 genes
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7 of 9 corroborated by 2+ sources
OTOF(1), DIAPH3(8), DIAPH1(3), MYO7A(4), TWNK(1), WFS1(3), SLC17A8(3), TBC1D24(3), ATP11A(4)
0.064 0.290 1.17e-12 1.41e-11 ✓ sig. Cluster 26 →
Crest syndrome Myositis
7 genes
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2 of 7 corroborated by 2+ sources
DGKQ(1), HLA-DRB1(2), ATG5(1), IRF5(2), STAT4(1), TNPO3(1), DNASE1L3(1)
0.092 0.333 1.19e-12 1.43e-11 ✓ sig. Cluster 25 →
Angle closure glaucoma Primary angle closure glaucoma
5 genes
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5 of 5 corroborated by 2+ sources
COL11A1(2), FERMT2(2), GLIS3(2), EPDR1(2), PLEKHA7(2)
0.192 0.357 1.21e-12 1.45e-11 ✓ sig. Cluster 21 →
Junctional epidermolysis bullosa Weber-cockayne syndrome
4 genes
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1 of 4 corroborated by 2+ sources
KRT5(1), ITGB4(6), GALK1(1), KRT14(1)
0.211 1.000 1.31e-12 1.57e-11 ✓ sig. —
Congenital ear anomaly Congenital sensorineural hearing loss
5 genes
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MYO15A(1), USH2A(1), TBCEL-TECTA(1), MITF(1), TECTA(1)
0.143 0.625 1.31e-12 1.57e-11 ✓ sig. —
Laryngeal carcinoma Laryngeal neoplasms
4 genes
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ATXN10(1), PRKG1(1), WNT7B(1), SH3BP4(1)
0.308 0.667 1.34e-12 1.61e-11 ✓ sig. —
46,xx ovotesticular disorder of sex development Swyer syndrome
4 genes
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3 of 4 corroborated by 2+ sources
NR5A1(1), DMRT1(2), SOX9(2), SRY(2)
0.308 0.667 1.34e-12 1.61e-11 ✓ sig. Cluster 38 →
Congenital hyperinsulinism monogenic diabetes
4 genes
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4 of 4 corroborated by 2+ sources
ABCC8(3), HNF4A(3), KCNJ11(3), GCK(3)
0.308 0.667 1.34e-12 1.61e-11 ✓ sig. Cluster 36 →
Differentiated thyroid carcinoma Thyroid neoplasms
8 genes
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8 of 8 corroborated by 2+ sources
TERT(3), BRAF(2), RET(3), PPARG(2), KRAS(2), HRAS(2), TPR(2), NCOA4(2)
0.091 0.174 1.37e-12 1.64e-11 ✓ sig. —
Nervous system disease Peripheral nervous system disease
9 genes
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9 of 9 corroborated by 2+ sources
DPYD(2), GFAP(2), NGF(2), PNPLA6(2), CSF3(2), ABCB1(2), CYP2C8(2), CASP9(2), ATF3(2)
0.080 0.170 1.40e-12 1.67e-11 ✓ sig. Cluster 243 →
Myasthenia gravis Uveomeningoencephalitic syndrome
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), FAS(2), HLA-DQB1(1), PTPN22(2)
0.122 0.714 1.46e-12 1.74e-11 ✓ sig. Cluster 1 →
Achromatopsia Cone dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
CNGA3(3), CNGB3(4), GNAT2(4), PDE6C(7), PDE6H(2)
0.122 0.714 1.46e-12 1.74e-11 ✓ sig. —
Saldino-noonan syndrome Short rib dysplasia-polydactyly syndrome
5 genes
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5 of 5 corroborated by 2+ sources
NEK1(3), DYNC2H1(4), DYNC2I1(4), DYNC2I2(4), DYNLT2B(2)
0.167 0.500 1.48e-12 1.76e-11 ✓ sig. Cluster 22 →
Diabetic cardiomyopathy Ventricular dysfunction
6 genes
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6 of 6 corroborated by 2+ sources
INS(2), ATP2A2(2), AGT(2), IGF2R(2), TNF(2), LEPR(2)
0.109 0.429 1.49e-12 1.78e-11 ✓ sig. —
Autoimmune hepatitis Glomerulonephritis
9 genes
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7 of 9 corroborated by 2+ sources
HLA-DQA1(1), F2(1), IL10(2), IL2(2), IL6(2), IFNG(2), CCL2(2), IL18(2), CCL5(2)
0.071 0.237 1.50e-12 1.79e-11 ✓ sig. Cluster 16 →
Melas syndrome Progressive external ophthalmoplegia
5 genes
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5 of 5 corroborated by 2+ sources
IL1A(2), IL1B(2), SOD2(2), SOD1(2), POLG(3)
0.185 0.385 1.52e-12 1.81e-11 ✓ sig. Cluster 32 →
Congenital impairment of spermatozoa motility Teratozoospermia
6 genes
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ARMC2(1), CFAP43(1), DNAH1(1), AKAP4(1), TTC21A(1), USP26(1)
0.133 0.261 1.58e-12 1.88e-11 ✓ sig. Cluster 31 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.