Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Retinitis pigmentosa-deafness syndrome Usher syndrome
10 genes
Show details
8 of 10 corroborated by 2+ sources
PCDH15(7), USH2A(7), HARS1(7), PSAP(1), CDH23(8), MYO7A(7), WHRN(6), CLRN1(7), USH1G(7), C10orf105(1)
0.217 0.909 1.32e-25 3.33e-24 ✓ sig. —
Mood disorder Post-traumatic stress disorder
37 genes
Show details
8 of 37 corroborated by 2+ sources
KANSL1(1), BLTP1(1), ADCY8(3), ANK3(1), ARHGAP15(1), CACNA1E(1), CSE1L(1), DCC(1), FOXP2(1), GABBR1(1), GRM8(1), KAZN(1) +25 more
0.080 0.182 1.34e-25 3.38e-24 ✓ sig. Cluster 2 →
Diabetic retinopathy Ischemic heart disease
28 genes
Show details
7 of 28 corroborated by 2+ sources
ACE(1), APOB(1), APOE(2), SERPINE1(1), VEGFA(2), NOS3(1), ADRB3(1), AGER(1), AGTR1(2), EPO(1), GSTT1(1), IL10(1) +16 more
0.091 0.171 1.35e-25 3.39e-24 ✓ sig. —
Congenital ichthyosiform erythroderma Congenital ichthyosis
8 genes
Show details
8 of 8 corroborated by 2+ sources
TGM1(3), SDR9C7(3), ABCA12(5), ALOX12B(3), ALOXE3(3), PNPLA1(3), NIPAL4(3), CERS3(3)
0.533 0.889 1.48e-25 3.72e-24 ✓ sig. Cluster 233 →
Colorectal neoplasms Ovarian neoplasms
31 genes
Show details
TP53(1), TP63(1), ATP7B(1), EGFR(1), EPCAM(1), MSH2(1), YAP1(1), SOD2(1), TLR4(1), AKT1(1), CTNNB1(1), DLC1(1) +19 more
0.079 0.237 1.54e-25 3.85e-24 ✓ sig. Cluster 5 →
Pelvic organ prolapse Uterine prolapse
13 genes
Show details
WT1(1), FBN2(1), SORBS2(1), EFEMP1(1), PNPT1(1), GDF7(1), MAFF(1), PLA2G6(1), POLD3(1), HNRNPA1L3(1), WNT4(1), SLC12A2(1) +1 more
0.092 0.867 1.54e-25 3.86e-24 ✓ sig. Cluster 146 →
Kidney disease Nephrotic syndrome
39 genes
Show details
22 of 39 corroborated by 2+ sources
WT1(4), COL4A5(1), ATIC(1), COL4A3(1), COL4A4(1), ALMS1(1), ACTN4(1), AGT(2), LAMB2(3), REN(2), TRPC6(1), EPO(2) +27 more
0.071 0.235 1.70e-25 4.24e-24 ✓ sig. —
Colorectal adenoma Neoplasms
18 genes
Show details
TERT(1), NXN(1), RHPN2(1), COL4A2(1), MYRF(1), TMEM258(1), LAMC1(1), SMAD6(1), SMAD7(1), CCND2(1), HHIP(1), EIF3H(1) +6 more
0.107 0.383 1.86e-25 4.66e-24 ✓ sig. Cluster 20 →
Cerebellar ataxia Neuropathy, ataxia, and retinitis pigmentosa
12 genes
Show details
1 of 12 corroborated by 2+ sources
ND1(1), ND2(1), ATP6(2), COX3(1), TDP1(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.103 0.923 1.93e-25 4.82e-24 ✓ sig. —
Fahr's disease Primary familial brain calcification
7 genes
Show details
7 of 7 corroborated by 2+ sources
PDGFRB(4), XPR1(4), PDGFB(4), JAM2(4), SLC20A2(3), MYORG(4), NAA60(2)
0.778 1.000 1.97e-25 4.90e-24 ✓ sig. Cluster 390 →
Bonnevie-ullrich syndrome Turner syndrome
7 genes
Show details
5 of 7 corroborated by 2+ sources
CAT(2), IGFBP3(1), SOD2(2), SOD1(2), VDR(1), GH1(2), NOS2(2)
0.778 1.000 1.97e-25 4.90e-24 ✓ sig. Cluster 285 →
Cholecystitis Cholecystolithiasis
12 genes
Show details
1 of 12 corroborated by 2+ sources
ABCG8(2), CRBN(1), SUMF1(1), TMEM132C(1), GPC1(1), KCNJ6(1), ADAM19(1), KDM4C(1), DYRK1A(1), EHF(1), FHIP2B(1), LARP1(1)
0.084 1.000 2.36e-25 5.86e-24 ✓ sig. Cluster 237 →
Bilirubin metabolism disease Perinatal disease
8 genes
Show details
UGT1A10(1), UGT1A8(1), UGT1A9(1), UGT1A6(1), UGT1A3(1), UGT1A4(1), UGT1A5(1), UGT1A7(1)
0.533 0.800 2.85e-25 7.07e-24 ✓ sig. Cluster 260 →
Liver neoplasms Lung neoplasms
31 genes
Show details
TERT(1), TP53(1), BRAF(1), ESR1(1), HMOX1(1), IL2(1), NFE2L2(1), STAT3(1), TNF(1), XPC(1), FHIT(1), GSTM1(1) +19 more
0.082 0.204 2.96e-25 7.34e-24 ✓ sig. Cluster 5 →
Bipolar depression Depression
28 genes
Show details
COMT(1), INS(1), DISC1(1), HTR1A(1), NTRK2(1), RELN(1), BDNF(1), MAOA(1), MTHFR(1), S100B(1), DRD1(1), GAD1(1) +16 more
0.078 0.267 3.06e-25 7.58e-24 ✓ sig. Cluster 2 →
Complex cortical dysplasia with other brain malformations Cortical dysplasia with other brain malformations
8 genes
Show details
8 of 8 corroborated by 2+ sources
TUBG1(4), KIF26A(5), TUBB2A(5), KIF5C(5), TUBB(4), TUBB3(4), TUBB2B(6), KIF2A(5)
0.444 1.000 3.11e-25 7.69e-24 ✓ sig. Cluster 176 →
Cerebellar ataxia Spastic ataxia
19 genes
Show details
4 of 19 corroborated by 2+ sources
CACNA1A(1), CACNA1G(1), SCN8A(2), SETX(1), PNPLA6(1), ITPR1(1), HARS1(1), ERCC4(1), DNMT1(1), FLNC(1), SEPSECS(1), SYNE1(1) +7 more
0.114 0.271 3.21e-25 7.93e-24 ✓ sig. Cluster 79 →
Metabolic syndrome Willis-ekbom disease
67 genes
Show details
2 of 67 corroborated by 2+ sources
ADGRB3(1), ALCAM(1), ASB3(1), BTBD9(3), CAMTA1(1), CNTNAP2(1), DAB1(1), GRIA1(1), HLA-DRB1(1), IGSF11(1), LINGO2(1), LSAMP(1) +55 more
0.047 0.351 3.25e-25 8.01e-24 ✓ sig. Cluster 2 →
Graves disease Hyperthyroidism
17 genes
Show details
10 of 17 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), ICOS(1), VEGFA(2), TNF(2), HLA-DQB1(2), BACH2(1), CTLA4(3), IL2RA(1), MUC22(1), PTPN22(3), TG(3) +5 more
0.125 0.321 3.47e-25 8.56e-24 ✓ sig. Cluster 39 →
Congenital aneurysm of ascending aorta Thoracic aortic aneurysm and aortic dissection
10 genes
Show details
7 of 10 corroborated by 2+ sources
FBN1(5), SMAD3(5), FOXE3(5), COL3A1(1), MYH11(5), NDE1(1), TGFBR2(5), LOX(5), SRFBP1(1), MYLK(5)
0.227 0.833 3.58e-25 8.82e-24 ✓ sig. Cluster 12 →
Congenital microcephaly Microcephaly
15 genes
Show details
14 of 15 corroborated by 2+ sources
FOXG1(2), CASK(2), ASPM(5), CDK5RAP2(4), PNKP(6), MCPH1(6), CIT(5), WDR62(6), CEP152(5), CPAP(6), KNL1(5), PHC1(5) +3 more
0.122 0.484 3.62e-25 8.90e-24 ✓ sig. Cluster 101 →
Neonatal diabetes mellitus Permanent neonatal diabetes mellitus
9 genes
Show details
8 of 9 corroborated by 2+ sources
INS(5), GATA4(2), INS-IGF2(1), ABCC8(5), KCNJ11(5), GCK(6), SLC2A2(2), PDX1(4), MNX1(2)
0.391 0.643 3.63e-25 8.92e-24 ✓ sig. Cluster 36 →
Obstructive pulmonary disease Respiratory system disease
51 genes
Show details
RERE(1), RREB1(1), EMSY(1), FADS1(1), FADS2(1), GABBR1(1), HLA-DQA1(1), ITGB8(1), RIN3(1), TBL1XR1(1), TET2(1), TSPAN14(1) +39 more
0.068 0.212 4.47e-25 1.10e-23 ✓ sig. Cluster 252 →
Developmental and epileptic encephalopathy Non-specific syndromic intellectual disability
41 genes
Show details
29 of 41 corroborated by 2+ sources
GABRD(1), HNRNPU(4), ATP1A3(5), ACTL6B(5), ANO4(1), CELF2(5), CHD2(4), CNTNAP2(2), EPHA4(1), GRIN2B(4), KCNQ2(7), MEF2C(1) +29 more
0.075 0.186 4.76e-25 1.17e-23 ✓ sig. Cluster 6 →
Fatty liver, alcoholic Nonalcoholic fatty liver disease
27 genes
Show details
24 of 27 corroborated by 2+ sources
INS(2), MTTP(3), CAT(2), PTEN(2), APOE(2), FGF21(2), LDLR(2), SREBF1(2), F2(2), LEP(2), MTHFR(1), NFE2L2(2) +15 more
0.072 0.314 4.78e-25 1.17e-23 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.