Gene Gene information from NCBI Gene database.
Entrez ID 2817
Gene name Glypican 1
Gene symbol GPC1
Synonyms (NCBI Gene)
glypican
Chromosome 2
Chromosome location 2q37.3
Summary Cell surface heparan sulfate proteoglycans are composed of a membrane-associated protein core substituted with a variable number of heparan sulfate chains. Members of the glypican-related integral membrane proteoglycan family (GRIPS) contain a core protei
miRNA miRNA information provided by mirtarbase database.
181
miRTarBase ID miRNA Experiments Reference
MIRT022703 hsa-miR-124-3p Microarray 18668037
MIRT023811 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT054857 hsa-miR-149-5p Luciferase reporter assayqRT-PCRWestern blot 24463821
MIRT054858 hsa-miR-149-3p Luciferase reporter assayqRT-PCRWestern blot 24463821
MIRT054858 hsa-miR-149-3p qRT-PCRWestern blotMTT 28233416
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0005507 Function Copper ion binding IDA 12732622
GO:0005515 Function Protein binding IPI 30282023
GO:0005576 Component Extracellular region HDA 27068509
GO:0005576 Component Extracellular region IEA
GO:0005615 Component Extracellular space TAS 2148568
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600395 4449 ENSG00000063660
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P35052
Protein name Glypican-1 [Cleaved into: Secreted glypican-1]
Protein function Cell surface proteoglycan that bears heparan sulfate. Binds, via the heparan sulfate side chains, alpha-4 (V) collagen and participates in Schwann cell myelination (By similarity). May act as a catalyst in increasing the rate of conversion of pr
PDB 4ACR , 4AD7 , 4BWE , 4YWT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01153 Glypican 11 555 Glypican Family
Sequence
Sequence length 558
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
9
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANDROGENETIC ALOPECIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHOLECYSTITIS, ACUTE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHOLELITHIASIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
GPC1-related disorder Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 29785020
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 29327712
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 29963198
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma BEFREE 25046223
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 17016645, 28232049, 28440066, 29245923, 29570265, 29721179, 30358133, 30800217, 31400579
★☆☆☆☆
Found in Text Mining only
Ataxia Ataxia Pubtator 37585105 Associate
★☆☆☆☆
Found in Text Mining only
Benign Prostatic Hyperplasia Benign Prostatic Hyperplasia BEFREE 29672570
★☆☆☆☆
Found in Text Mining only
Biliary Atresia Biliary Atresia BEFREE 23336978, 27373597
★☆☆☆☆
Found in Text Mining only
Biliary Atresia Biliary Atresia ORPHANET_DG 23336978
★☆☆☆☆
Found in Text Mining only
Biliary Atresia Biliary atresia Pubtator 30358741, 32315284 Associate
★☆☆☆☆
Found in Text Mining only