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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Postaxial polydactyly Rod-cone dystrophy
12 genes
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ND1(1), ND2(1), ATP6(1), COX3(1), BBIP1(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.279 0.571 2.79e-28 8.00e-27 ✓ sig. Cluster 32 →
Connective tissue disease Osteochondrodysplasias
17 genes
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7 of 17 corroborated by 2+ sources
HSPG2(2), SLC26A2(1), COL2A1(2), COL11A1(2), DYM(1), FLNB(1), TRPV4(2), FLNA(2), COL11A2(1), COMP(1), COL9A1(2), COL9A2(1) +5 more
0.127 0.515 2.95e-28 8.45e-27 ✓ sig. —
Hepatocellular carcinoma Liver neoplasms
47 genes
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7 of 47 corroborated by 2+ sources
TERT(2), TP53(4), SCD(1), BRAF(1), CDKN2B(1), FST(1), HLA-DQA1(1), IGF2(1), MAU2(1), ESR1(2), NFE2L2(1), PPARG(1) +35 more
0.062 0.309 3.43e-28 9.80e-27 ✓ sig. —
Atopic dermatitis Hypersensitivity
18 genes
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18 of 18 corroborated by 2+ sources
CCL24(2), MS4A2(2), IL10(2), IL1B(2), IL4(2), TNF(2), IL6(2), TGFB1(2), IFNG(2), CYP1A1(2), CXCR3(2), IL13(2) +6 more
0.151 0.273 3.72e-28 1.06e-26 ✓ sig. Cluster 16 →
Cor pulmonale Heart disease
14 genes
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FGA(1), APOC1(1), PLCG2(1), SLC14A2(1), F2(1), ABO(1), SLC19A2(1), F5(1), SLC44A2(1), FGG(1), PROCR(1), F11(1) +2 more
0.095 0.933 3.73e-28 1.06e-26 ✓ sig. —
Head and neck neoplasms Oropharyngeal cancer
16 genes
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LAMC3(1), RERGL(1), IL1A(1), IL1B(1), CCDC192(1), HLA-DQB1(1), CTLA4(1), MACO1(1), STK31(1), CBLB(1), ADH1C(1), NAA25(1) +4 more
0.174 0.340 4.37e-28 1.24e-26 ✓ sig. —
Marshall syndrome Stickler syndrome
10 genes
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10 of 10 corroborated by 2+ sources
COL2A1(7), COL11A1(6), BMP4(4), LRP2(2), VCAN(2), COL11A2(2), COL9A1(8), COL9A2(7), COL9A3(8), LOXL3(3)
0.417 0.714 4.48e-28 1.27e-26 ✓ sig. Cluster 248 →
Digestive system disease Gastrointestinal disease
16 genes
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13 of 16 corroborated by 2+ sources
CHD8(2), CRTC1(1), FOXP1(1), MTHFR(2), NFE2L2(2), POMC(2), CSF3(2), KEAP1(2), CCK(2), MYLK(2), EDN1(2), ABCC2(2) +4 more
0.145 0.500 4.48e-28 1.27e-26 ✓ sig. —
complex neurodevelopmental disorder Developmental and epileptic encephalopathy
29 genes
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29 of 29 corroborated by 2+ sources
GABRD(2), HNRNPU(5), CHD2(5), CNTNAP2(3), GRIN2B(5), KCNQ2(7), MEF2C(2), NRXN2(2), SCN8A(7), ST3GAL3(4), GRIN2A(4), KCNB1(7) +17 more
0.094 0.246 5.07e-28 1.44e-26 ✓ sig. Cluster 6 →
Brain ischemia Cerebrovascular disorder
19 genes
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19 of 19 corroborated by 2+ sources
ACE(2), PLAU(2), F2(2), ICAM1(2), IL1B(2), MTHFR(2), TNF(2), IL6(2), PLAT(2), PTGS2(2), SOD1(2), ALB(2) +7 more
0.140 0.271 5.76e-28 1.63e-26 ✓ sig. —
Hereditary breast and ovarian cancer syndrome Hereditary breast cancer
11 genes
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11 of 11 corroborated by 2+ sources
CHEK2(2), NBN(2), RAD51(2), RAD50(2), ATM(2), MRE11(2), BARD1(2), PALB2(2), BRCA2(4), BRIP1(3), BRCA1(4)
0.297 0.733 6.08e-28 1.72e-26 ✓ sig. Cluster 132 →
Movement disorder Periodic limb movement disorder
11 genes
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BTBD9(1), CNTNAP5(1), EMB(1), HCN1(1), MAP2K5(1), PTPRD(1), MYT1(1), MEIS1(1), CCDC148(1), STK33(1), LMO1(1)
0.190 1.000 6.41e-28 1.81e-26 ✓ sig. Cluster 13 →
Hyperalgesia Trigeminal neuralgia
12 genes
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12 of 12 corroborated by 2+ sources
GFAP(2), IL1B(2), TNF(2), FOS(2), MAPK1(2), MAPK3(2), PRKCG(2), CALCA(2), GRIN1(2), AIF1(2), MAPK8(2), MAPK9(2)
0.133 1.000 6.43e-28 1.81e-26 ✓ sig. —
22q11.2 deletion syndrome Digeorge syndrome
9 genes
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9 of 9 corroborated by 2+ sources
ARVCF(2), COMT(3), GP1BB(2), HIRA(2), JMJD1C(3), RREB1(3), SEC24C(3), TBX1(6), UFD1(2)
0.450 1.000 6.91e-28 1.94e-26 ✓ sig. —
Gastroesophageal reflux disease Post-traumatic stress disorder
38 genes
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AFF3(1), CNTNAP5(1), CSMD1(1), DCC(1), FOXP1(1), FOXP2(1), GRM8(1), IP6K1(1), KAZN(1), LINC02210-CRHR1(1), MAD1L1(1), MAPT(1) +26 more
0.085 0.187 8.58e-28 2.41e-26 ✓ sig. Cluster 2 →
Benign pemphigus Darier disease
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.727 0.889 1.04e-27 2.91e-26 ✓ sig. Cluster 80 →
Autoimmune thyroid disease Hyperthyroidism
20 genes
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8 of 20 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRA(2), HLA-DRB1(2), ICOS(1), PDE10A(1), TAP2(1), HLA-DQB1(2), BACH2(1), CTLA4(2), IL2RA(1), PHTF1(1), PTPN22(2) +8 more
0.112 0.377 1.04e-27 2.92e-26 ✓ sig. Cluster 39 →
Biliary cirrhosis Sclerosing cholangitis
30 genes
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9 of 30 corroborated by 2+ sources
SH2B3(1), ETS1(1), HLA-DQA1(2), HLA-DRA(1), ATXN2(1), HLA-DQB1(1), ATG5(1), CCR6(1), CCL20(1), CD226(1), CEP43(1), CLEC16A(2) +18 more
0.091 0.234 1.07e-27 2.99e-26 ✓ sig. —
Congenital ichthyosis Congenital nonbullous ichthyosiform erythroderma
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(4), SDR9C7(2), ABCA12(4), ALOX12B(4), ALOXE3(4), PNPLA1(4), NIPAL4(3), CERS3(4), CASP14(2)
0.529 0.750 1.17e-27 3.29e-26 ✓ sig. Cluster 233 →
Congenital cataract Lamellar cataract
11 genes
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11 of 11 corroborated by 2+ sources
BFSP2(4), CRYAA(4), CRYBA4(3), CRYGC(4), CRYAB(3), CRYGD(3), CRYGS(3), HSF4(4), MIP(3), CRYBA1(4), CRYGB(3)
0.180 1.000 1.19e-27 3.32e-26 ✓ sig. Cluster 43 →
Macular dystrophy Optic atrophy
20 genes
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3 of 20 corroborated by 2+ sources
ABCA4(1), CNGA3(1), CNGB3(1), PRPH2(2), CACNA1F(1), USH2A(1), CRB1(1), GUCY2D(1), PROM1(3), EFEMP1(1), OTX2(1), GPHN(1) +8 more
0.097 0.455 1.20e-27 3.34e-26 ✓ sig. Cluster 7 →
Atherosclerosis Congestive heart failure
27 genes
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25 of 27 corroborated by 2+ sources
AGT(2), APOC1(2), APOE(3), SERPINE1(2), VEGFA(2), NOS3(2), PON1(2), PPARG(2), SOD2(2), STAT3(2), TNF(2), IL6(3) +15 more
0.099 0.227 1.29e-27 3.58e-26 ✓ sig. —
Cardiac arrhythmia Wolff-parkinson-white syndrome
18 genes
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15 of 18 corroborated by 2+ sources
COL5A1(1), TBX5(2), DSP(1), KCNJ2(2), CACNA1C(2), PITX2(2), MYH6(2), CASQ2(2), FLNC(2), KCNH2(2), KCNQ1(2), LMNA(2) +6 more
0.136 0.353 1.33e-27 3.71e-26 ✓ sig. Cluster 4 →
Crest syndrome Systemic sclerosis
15 genes
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7 of 15 corroborated by 2+ sources
FBN1(1), DGKQ(1), HLA-DRB1(2), CAV1(2), ATG5(1), CCR6(2), IRF5(3), FCGR2B(1), FCGR3B(1), STAT4(2), TNPO3(1), CCN2(2) +3 more
0.111 0.714 1.40e-27 3.88e-26 ✓ sig. Cluster 25 →
Brugada syndrome Cardiac arrhythmia
19 genes
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16 of 19 corroborated by 2+ sources
COL5A1(1), PKP2(5), TBX5(1), DSP(1), KCNJ2(2), CACNA1C(7), KCNH2(4), KCNQ1(2), RYR2(2), SCN5A(8), TTN(2), ANK2(7) +7 more
0.133 0.302 1.44e-27 4.01e-26 ✓ sig. Cluster 4 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.