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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Muscular dystrophy Myopathy
20 genes
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1 of 20 corroborated by 2+ sources
COL6A3(1), DAG1(1), DMD(1), PLEC(1), HMGCR(1), CRPPA(1), TRAPPC11(1), ANO5(1), SMCHD1(1), TTN(1), DYSF(1), LAMA2(1) +8 more
0.139 0.392 1.86e-30 5.72e-29 ✓ sig. Cluster 14 →
Diabetic nephropathy type 2 Diabetic retinopathy
16 genes
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2 of 16 corroborated by 2+ sources
CDKAL1(2), HMG20A(1), JAZF1(1), MACF1(1), NYAP2(1), TCF7L2(1), FTO(1), ASCL2(1), GPSM1(1), ZMIZ1(1), KCNQ1(1), SLC30A8(1) +4 more
0.096 0.889 1.95e-30 5.99e-29 ✓ sig. Cluster 73 →
Diabetes mellitus type 1 Sarcoidosis
45 genes
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21 of 45 corroborated by 2+ sources
SH2B3(3), ACE(1), BTNL2(5), HLA-C(1), HLA-DQA1(3), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), HLA-DRB5(1), OR5V1(1), TNXB(1), XYLT1(2) +33 more
0.076 0.276 2.06e-30 6.32e-29 ✓ sig. Cluster 28 →
Ovarian neoplasms Pancreatic neoplasms
26 genes
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4 of 26 corroborated by 2+ sources
PTEN(1), TERT(1), TP53(1), TP63(2), EGFR(1), EPCAM(1), MECOM(2), MSH2(2), SOD2(1), STAT3(1), CTNNB1(1), KRAS(1) +14 more
0.117 0.222 4.26e-30 1.31e-28 ✓ sig. Cluster 5 →
Cutaneous squamous cell carcinoma Seborrheic keratosis
14 genes
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TP63(1), BNC2(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), LPP(1), TYR(1), CASP8(1), CPVL(1), FLACC1(1), KRT6A(1) +2 more
0.250 0.452 5.21e-30 1.59e-28 ✓ sig. Cluster 29 →
Leber hereditary optic neuropathy Neuropathy, ataxia, and retinitis pigmentosa
11 genes
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7 of 11 corroborated by 2+ sources
ND1(2), ND2(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2), ND4L(2)
0.355 0.846 5.80e-30 1.77e-28 ✓ sig. Cluster 32 →
Combined immunodeficiency disease Severe combined immunodeficiency
16 genes
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16 of 16 corroborated by 2+ sources
CARD11(5), LRBA(4), ZAP70(6), DOCK8(5), TFRC(3), CD70(4), FOXN1(2), STK4(5), RAG1(6), CARMIL2(3), IL2RG(2), MALT1(4) +4 more
0.200 0.364 5.94e-30 1.81e-28 ✓ sig. Cluster 10 →
Hypotrichosis Hypotrichosis simplex
10 genes
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9 of 10 corroborated by 2+ sources
LSS(6), APCDD1(6), KRT74(6), CDSN(6), CDH3(1), DSG4(6), LIPH(5), LPAR6(7), RPL21(6), SNRPE(6)
0.500 0.833 6.23e-30 1.90e-28 ✓ sig. —
Cholelithiasis Liver cirrhosis
34 genes
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34 of 34 corroborated by 2+ sources
CAT(2), SERPINA1(3), AGT(2), CYP1A2(2), SERPINE1(2), MPO(2), NOS3(2), ICAM1(2), IGF1(2), NFE2L2(2), TNF(2), IL6(2) +22 more
0.092 0.245 6.62e-30 2.02e-28 ✓ sig. Cluster 226 →
Arrhythmogenic right ventricular cardiomyopathy Conduction disorder of the heart
14 genes
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8 of 14 corroborated by 2+ sources
DMD(1), DSG2(6), JUP(5), PKP2(7), RBM20(1), TRPM4(1), DSP(4), MYH6(1), FLNC(1), RYR2(3), SCN5A(3), MYH7(3) +2 more
0.222 0.583 7.06e-30 2.14e-28 ✓ sig. Cluster 4 →
Jeune thoracic dystrophy Majewski syndrome
11 genes
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EVC2(1), NEK1(1), IFT80(1), DYNC2H1(1), DYNC2LI1(1), IFT172(1), TTC21B(1), WDR35(1), IFT74(1), FUZ(1), TRAF3IP1(1)
0.314 0.917 8.05e-30 2.44e-28 ✓ sig. Cluster 22 →
Ruptured abdominal aortic aneurysm Ruptured aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured abdominal aortic aneurysm Ruptured thoracic aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured abdominal aortic aneurysm Thoracoabdominal aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Ruptured thoracic aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Thoracoabdominal aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Ruptured thoracic aortic aneurysm Thoracoabdominal aortic aneurysm
8 genes
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SKI(1), FBN1(1), AGT(1), ELN(1), SMAD3(1), MMP9(1), EFEMP2(1), TGFBR2(1)
0.889 1.000 1.28e-29 3.84e-28 ✓ sig. Cluster 66 →
Conduction disorder of the heart Ventricular fibrillation
13 genes
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1 of 13 corroborated by 2+ sources
DSG2(1), JUP(1), PKP2(1), RBM20(1), TRPM4(1), DSP(1), CACNA1C(1), MYH6(1), KCNH2(1), RYR2(1), SCN5A(3), TTN(1) +1 more
0.271 0.542 1.30e-29 3.90e-28 ✓ sig. Cluster 4 →
Congenital ichthyosiform erythroderma Lamellar ichthyosis
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(2), SDR9C7(3), SULT2B1(3), ABCA12(3), ALOX12B(3), ALOXE3(3), PNPLA1(2), NIPAL4(2), CERS3(2)
0.600 1.000 1.50e-29 4.49e-28 ✓ sig. Cluster 233 →
Alzheimer disease Metabolic syndrome
335 genes
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38 of 335 corroborated by 2+ sources
ANKRD11(1), HSPG2(1), RERE(1), JMJD1C(1), RREB1(1), INS(2), GATA4(2), ZFPM2(1), APOA1(2), PDE4D(1), ADK(1), ABCA1(2) +323 more
0.105 0.257 1.53e-29 4.59e-28 ✓ sig. Cluster 2 →
Bilirubin metabolism disease Gilbert syndrome
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A6(2), SLCO1B1(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.643 0.900 1.64e-29 4.92e-28 ✓ sig. Cluster 260 →
Gout Hypertension
157 genes
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38 of 157 corroborated by 2+ sources
INS(3), SRD5A2(1), ATP2A2(2), PIK3R1(1), CHEK2(1), SPI1(1), CDH2(1), ALG9(1), COL4A4(2), ALDH1A2(1), APOC1(1), AUTS2(1) +145 more
0.087 0.192 1.80e-29 5.38e-28 ✓ sig. —
Leber congenital amaurosis Macular dystrophy
17 genes
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6 of 17 corroborated by 2+ sources
ABCA4(1), CNGB3(1), PRPH2(3), PDE6B(1), TTC8(1), USH2A(1), CRB1(6), CRX(6), GUCY2D(6), PROM1(3), OTX2(1), GPHN(1) +5 more
0.170 0.386 1.98e-29 5.91e-28 ✓ sig. Cluster 7 →
Colonic neoplasms Colorectal neoplasms
40 genes
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3 of 40 corroborated by 2+ sources
DPYD(1), TP53(1), EGFR(1), IGF2(1), RHPN2(2), SRC(1), TCF7L2(1), TET2(2), BAX(1), BCL2(1), MTHFR(1), PPARG(1) +28 more
0.088 0.197 2.07e-29 6.15e-28 ✓ sig. Cluster 5 →
Cleft palate and bilateral cleft lip Leber hereditary optic neuropathy
11 genes
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7 of 11 corroborated by 2+ sources
ND1(2), ND2(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2), ND4L(2)
0.344 0.786 2.71e-29 8.05e-28 ✓ sig. Cluster 32 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.