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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
46,xy partial gonadal dysgenesis 46,xy sex reversal
5 genes
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4 of 5 corroborated by 2+ sources
NR5A1(2), SRY(1), DHX37(2), MAP3K1(2), ZFPM2(2)
0.455 0.714 1.63e-16 2.58e-15 ✓ sig. Cluster 38 →
Polydactyly Postaxial polydactyly
8 genes
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6 of 8 corroborated by 2+ sources
GLI3(4), KIF7(1), IQCE(4), BBS10(1), GLI1(5), CIBAR1(5), KIAA0825(5), ZNF141(4)
0.151 0.381 1.56e-16 2.48e-15 ✓ sig. —
Congenital cystic eyeball Microphthalmia
6 genes
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6 of 6 corroborated by 2+ sources
PRSS56(3), RAX(3), VSX2(6), ALDH1A3(3), GDF6(5), GDF3(6)
0.154 1.000 1.49e-16 2.37e-15 ✓ sig. Cluster 56 →
Hereditary motor and sensory neuropathies Motor neuron disease
12 genes
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2 of 12 corroborated by 2+ sources
SETX(1), TRPV4(3), DCTN1(1), DYNC1H1(1), MFN2(4), NEFH(1), NEFL(1), SH3TC2(1), PLEKHG5(1), GARS1(1), MPZ(1), IGHMBP2(1)
0.095 0.182 1.41e-16 2.24e-15 ✓ sig. Cluster 15 →
Metabolic syndrome Oligodendroglioma
108 genes
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1 of 108 corroborated by 2+ sources
SOX5(1), DPYD(1), ADGRB3(1), AGBL1(1), ALCAM(1), ANK3(1), C6orf118(1), CADPS(1), CBLN2(1), CDH13(1), CNTNAP2(1), CPNE4(1) +96 more
0.062 0.193 1.40e-16 2.22e-15 ✓ sig. Cluster 2 →
Bone disease Craniofacial abnormalities
16 genes
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15 of 16 corroborated by 2+ sources
SLC26A2(2), BMPR1B(2), LTBP3(2), DLX5(2), ITGB1BP1(2), TGFB2(2), TRPS1(2), SH3PXD2B(1), AHR(2), LRP2(2), TGFBR2(2), MMP2(2) +4 more
0.072 0.195 1.32e-16 2.11e-15 ✓ sig. —
Colorectal adenoma Colorectal neoplasms
24 genes
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24 of 24 corroborated by 2+ sources
BMP2(2), NXN(2), RHPN2(2), TCF7L2(2), TET2(2), VTI1A(2), BMP4(2), KLF5(2), SMAD3(2), APC(2), ZMIZ1(2), SMAD9(2) +12 more
0.059 0.173 1.26e-16 2.01e-15 ✓ sig. —
Curling ulcer Duodenal ulcer
6 genes
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6 of 6 corroborated by 2+ sources
PLA2G4A(2), PTGS2(2), TGFB1(2), ABO(3), NOS2(2), PSCA(3)
0.158 1.000 1.26e-16 2.00e-15 ✓ sig. —
Open angle glaucoma Osteoarthritis
59 genes
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14 of 59 corroborated by 2+ sources
HMGA2(1), NFIA(1), LTBP3(3), ABRAXAS2(1), ANTXR1(1), APOE(2), BCAS3(1), BNC2(1), CCDC91(1), CLIC5(1), COL11A1(3), ERG(1) +47 more
0.057 0.160 1.24e-16 1.98e-15 ✓ sig. —
Interstitial cystitis Sarcoidosis
13 genes
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2 of 13 corroborated by 2+ sources
HLA-C(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), OR5V1(1), PPT2(1), TNXB(1), C2(1), HLA-DQB1(2), NOTCH4(1), HLA-DOB(1) +1 more
0.068 0.325 1.21e-16 1.94e-15 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy Cardiac conduction disease
7 genes
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3 of 7 corroborated by 2+ sources
CACNB2(1), TRPM4(1), MYH6(1), LMNA(2), SCN5A(3), FPGT-TNNI3K(1), TNNI3K(3)
0.127 0.778 1.18e-16 1.88e-15 ✓ sig. Cluster 4 →
Hypomyelinating leukodystrophy Leukodystrophy
8 genes
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8 of 8 corroborated by 2+ sources
POLR3B(5), TMEM163(4), HSPD1(4), PYCR2(4), POLR3A(4), RARS1(5), DEGS1(5), TMEM63A(3)
0.163 0.308 1.14e-16 1.83e-15 ✓ sig. Cluster 100 →
Cobalamin c disease Methylmalonic acidemia
6 genes
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6 of 6 corroborated by 2+ sources
PRDX1(5), MMACHC(7), MMADHC(6), ABCD4(7), HCFC1(5), LMBRD1(7)
0.207 0.857 1.12e-16 1.79e-15 ✓ sig. Cluster 246 →
Xeroderma pigmentosum Xeroderma pigmentosum-cockayne syndrome
5 genes
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4 of 5 corroborated by 2+ sources
ERCC2(7), ERCC4(7), BIVM-ERCC5(1), ERCC5(7), ERCC3(7)
0.385 1.000 1.10e-16 1.76e-15 ✓ sig. Cluster 86 →
Cardiofaciocutaneous syndrome noonan syndrome with multiple lentigines
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(7), NRAS(2), RAF1(2), PTPN11(3), MAP2K1(7)
0.385 1.000 1.10e-16 1.76e-15 ✓ sig. Cluster 42 →
Dejerine-sottas disease Distal hereditary motor neuropathy
9 genes
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7 of 9 corroborated by 2+ sources
TRPV4(3), DYNC1H1(2), FIG4(1), NEFL(1), HSPB1(6), PLEKHG5(3), GARS1(6), MPZ(3), HSPB8(6)
0.136 0.250 1.10e-16 1.76e-15 ✓ sig. Cluster 15 →
Congenital cystic eyeball Microphthalmos
6 genes
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1 of 6 corroborated by 2+ sources
PRSS56(2), RAX(1), VSX2(1), ALDH1A3(1), GDF6(1), GDF3(1)
0.162 1.000 1.05e-16 1.69e-15 ✓ sig. Cluster 56 →
Pulmonary alveolar proteinosis Pulmonary surfactant metabolism dysfunction
5 genes
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5 of 5 corroborated by 2+ sources
CSF2RB(6), SFTPC(5), SFTPB(5), ABCA3(3), CSF2RA(6)
0.455 0.833 1.05e-16 1.68e-15 ✓ sig. Cluster 1 →
Small vessel stroke Stroke
17 genes
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3 of 17 corroborated by 2+ sources
CASZ1(2), PRDM16(1), SH2B3(2), NBEAL1(1), WDR12(1), ATXN2(1), KNG1(1), COL4A2(1), GALNT18(1), SH3PXD2A(2), STN1(1), JPH3(1) +5 more
0.048 0.340 1.02e-16 1.64e-15 ✓ sig. —
Gonadal dysgenesis Perrault syndrome
7 genes
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7 of 7 corroborated by 2+ sources
CLPP(7), LARS2(6), TWNK(5), HSD17B4(7), ERAL1(5), HARS2(6), SGO2(2)
0.194 0.500 9.91e-17 1.59e-15 ✓ sig. —
Non-small-cell lung carcinoma Ovarian neoplasms
18 genes
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TP53(1), GRIK2(1), MACIR(1), SOD2(1), STAT3(1), AREG(1), TRMT11(1), KRAS(1), CXCL8(1), MET(1), MYC(1), BIRC5(1) +6 more
0.072 0.137 9.89e-17 1.59e-15 ✓ sig. Cluster 5 →
Esophageal neoplasms Lymphatic metastasis
10 genes
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GRIK2(1), MACIR(1), SOD2(1), TRMT11(1), MET(1), ERBB2(1), AQP3(1), CDKN2A(1), CCNH(1), SFN(1)
0.105 0.333 9.72e-17 1.57e-15 ✓ sig. Cluster 5 →
Nasal disorder Seasonal allergic rhinitis
10 genes
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EMSY(1), SMAD3(1), CLEC16A(1), IL18R1(1), IL7R(1), IKZF3(1), IL1RL1(1), RANBP6(1), SPEF2(1), WDR36(1)
0.088 0.435 8.98e-17 1.45e-15 ✓ sig. Cluster 137 →
Cholelithiasis Hepatomegaly
14 genes
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14 of 14 corroborated by 2+ sources
CYP1A2(2), NOS3(2), NFE2L2(2), RELA(2), ALB(2), TGFB1(2), KEAP1(2), NOS2(2), ABCC3(2), NR1H4(4), MAPK14(2), CYGB(2) +2 more
0.076 0.241 8.85e-17 1.43e-15 ✓ sig. —
Atherosclerosis Vascular disease
13 genes
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7 of 13 corroborated by 2+ sources
AGT(2), HDAC9(3), TCF7L2(1), MTHFR(2), SOD2(2), TNF(2), ATXN2(1), CHRNA3(1), TWIST1(1), LPA(2), AHR(2), CHRNA5(1) +1 more
0.082 0.250 8.83e-17 1.43e-15 ✓ sig. Cluster 307 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.