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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Graves disease Uveitis
10 genes
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5 of 10 corroborated by 2+ sources
HLA-DRB1(2), IL10(1), IL1B(1), TNF(1), IL6(2), TGFB1(2), HLA-B(2), IL23R(1), GC(2), IL13(1)
0.081 0.303 6.20e-15 8.83e-14 ✓ sig. —
Cone-rod dystrophy Nystagmus
10 genes
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5 of 10 corroborated by 2+ sources
ATF6(4), CNGB3(1), GUCY2D(5), RPGRIP1(6), RPE65(2), NMNAT1(2), CEP290(1), SCLT1(1), KCNV2(1), RHO(1)
0.093 0.233 5.90e-15 8.40e-14 ✓ sig. Cluster 7 →
Congenital hypothyroidism Thyroid dyshormonogenesis
5 genes
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5 of 5 corroborated by 2+ sources
IYD(5), TPO(5), SLC5A5(6), DUOX2(6), DUOXA2(5)
0.294 0.714 5.83e-15 8.30e-14 ✓ sig. Cluster 88 →
Hallervorden spatz syndrome Neurodegeneration with brain iron accumulation
5 genes
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5 of 5 corroborated by 2+ sources
PLA2G6(5), PANK2(3), WDR45(5), C19orf12(6), COASY(4)
0.294 0.714 5.83e-15 8.30e-14 ✓ sig. Cluster 92 →
Hemochromatosis Iron overload
5 genes
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5 of 5 corroborated by 2+ sources
CP(2), HAMP(6), SLC40A1(5), BMP6(5), FTH1(6)
0.294 0.714 5.83e-15 8.30e-14 ✓ sig. —
Hyperglycemia Maturity-onset diabetes of the young
7 genes
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7 of 7 corroborated by 2+ sources
INS(3), KLF11(2), PAX4(2), GCK(3), HNF1A(3), PDX1(2), NEUROD1(3)
0.119 0.538 5.56e-15 7.94e-14 ✓ sig. Cluster 36 →
Cardiac arrest Conduction disorder of the heart
7 genes
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DSG2(1), TRPM4(1), DSP(1), MYH6(1), RYR2(1), SCN5A(1), ANK2(1)
0.159 0.292 5.50e-15 7.85e-14 ✓ sig. Cluster 4 →
Hypoglycemia Maturity-onset diabetes of the young (mody)
7 genes
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6 of 7 corroborated by 2+ sources
INS(5), INS-IGF2(1), ABCC8(5), HNF4A(5), KCNJ11(6), GCK(6), HNF1A(5)
0.159 0.304 5.26e-15 7.51e-14 ✓ sig. Cluster 36 →
Hyperalgesia Status epilepticus
12 genes
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12 of 12 corroborated by 2+ sources
NTF3(2), NOS1(2), TNF(2), NGF(2), FOS(2), GDNF(2), PTGS2(2), CCL2(2), NOS2(2), IL1RN(2), CNR1(2), SLC12A5(2)
0.081 0.171 5.23e-15 7.48e-14 ✓ sig. —
Marshall syndrome Osteochondrodysplasias
7 genes
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7 of 7 corroborated by 2+ sources
SLC26A2(2), COL2A1(2), COL11A1(6), COL11A2(2), COL9A1(2), COL9A2(2), COL9A3(2)
0.152 0.368 5.20e-15 7.44e-14 ✓ sig. —
Hyperglycemia Maturity-onset diabetes of the young (mody)
8 genes
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7 of 8 corroborated by 2+ sources
INS(5), INS-IGF2(1), KLF11(5), PAX4(5), GCK(6), HNF1A(5), PDX1(6), NEUROD1(5)
0.118 0.348 4.54e-15 6.50e-14 ✓ sig. Cluster 36 →
Fatty liver, alcoholic Hyperglycemia
11 genes
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9 of 11 corroborated by 2+ sources
INS(2), LEP(2), NFE2L2(2), PON1(1), TF(1), SOD1(2), GPX1(2), CCL2(2), COL3A1(2), NUS1(2), LEPR(2)
0.086 0.212 4.27e-15 6.12e-14 ✓ sig. —
Bronchopulmonary dysplasia Obstructive airway disease
11 genes
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1 of 11 corroborated by 2+ sources
GSTP1(1), GSTT1(1), IL1B(2), MBL2(1), TNF(1), GSTM1(1), VDR(1), IL1RN(1), SFTPD(1), SFTPA1(1), SFTPB(1)
0.081 0.244 4.17e-15 5.98e-14 ✓ sig. Cluster 119 →
Erythematosquamous dermatosis Psoriasis vulgaris
8 genes
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IL23R(1), IL2RA(1), TYK2(1), ZMIZ1(1), IL13(1), POLI(1), CARD14(1), FAM8A1(1)
0.116 0.364 4.10e-15 5.88e-14 ✓ sig. Cluster 162 →
Gonadal dysgenesis Premature ovarian failure
10 genes
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5 of 10 corroborated by 2+ sources
WT1(1), BMP15(1), BNC1(4), MRPS22(1), NR5A1(5), FMR1(5), LARS2(1), FIGLA(5), SGO2(1), MSH4(4)
0.075 0.357 3.88e-15 5.58e-14 ✓ sig. —
Amphetamine or sympathomimetic abuse Movement disorder
11 genes
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11 of 11 corroborated by 2+ sources
MAP2K5(3), ACHE(2), GSTP1(2), PDYN(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), GSTM1(2), NRG1(2), OPRM1(2)
0.089 0.193 3.57e-15 5.13e-14 ✓ sig. Cluster 13 →
Mesothelioma Pulmonary fibrosis
16 genes
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16 of 16 corroborated by 2+ sources
CAT(2), SPP1(2), IL1A(2), IL4(2), PARP1(2), IL6(2), PDGFA(2), CXCL8(2), HGF(2), IL12B(2), FN1(2), CCL5(2) +4 more
0.068 0.150 3.44e-15 4.95e-14 ✓ sig. —
Hypoglycemia monogenic diabetes
6 genes
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6 of 6 corroborated by 2+ sources
INS(3), ABCC8(5), HNF4A(2), KCNJ11(2), GCK(2), HNF1A(3)
0.188 0.600 3.35e-15 4.82e-14 ✓ sig. Cluster 36 →
Dyslexia Specific language disorder
9 genes
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1 of 9 corroborated by 2+ sources
EPHA4(1), FOXP2(3), RBFOX2(1), STK24(1), ZFP64(1), COX6A1(1), PMFBP1(1), CCDC136(1), INIP(1)
0.074 0.474 3.29e-15 4.73e-14 ✓ sig. Cluster 179 →
Hyperinsulinism Hypoglycemia
8 genes
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8 of 8 corroborated by 2+ sources
INS(2), TNF(2), ABCC8(7), HNF4A(3), KCNJ11(3), GCK(3), HNF1A(3), GLUD1(2)
0.129 0.296 3.23e-15 4.65e-14 ✓ sig. Cluster 36 →
Movement disorder Seizures
13 genes
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13 of 13 corroborated by 2+ sources
HCN1(2), ACHE(2), CRH(2), PDYN(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), OPRM1(2), CNR1(2), SCN1A(2), SCN2A(5) +1 more
0.070 0.228 3.15e-15 4.54e-14 ✓ sig. Cluster 13 →
Dental caries Upper aerodigestive tract neoplasm
22 genes
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2 of 22 corroborated by 2+ sources
ABT1(1), ADGRL2(1), GLIS3(1), HLA-DQA1(1), HMGN4(1), RBMS3(1), THSD4(1), TNXB(1), IL1B(2), CHRNB4(1), HLA-DQB1(2), CARMIL1(1) +10 more
0.059 0.137 3.08e-15 4.44e-14 ✓ sig. —
Cholangiocarcinoma Pancreatic neoplasms
11 genes
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2 of 11 corroborated by 2+ sources
HNF1B(1), PTEN(1), TP53(1), EGFR(1), PTGS2(1), KRAS(1), SMAD4(1), BRCA2(2), BAP1(1), BRCA1(2), MSLN(1)
0.076 0.289 3.06e-15 4.41e-14 ✓ sig. Cluster 5 →
Esophageal neoplasms Non-small-cell lung carcinoma
14 genes
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TP53(1), CDH13(1), GRIK2(1), MACIR(1), ENO1(1), SOD2(1), UCHL1(1), TRMT11(1), CSF3(1), ABCB1(1), MET(1), PRDX1(1) +2 more
0.071 0.189 2.87e-15 4.14e-14 ✓ sig. Cluster 5 →
Esophageal squamous cell carcinoma Urinary bladder neoplasms
17 genes
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TP53(1), EGFR(1), KMT2C(1), SOD2(1), KMT2D(1), PTGS2(1), CREBBP(1), HIF1A(1), CDKN1A(1), SOX2(1), RB1(1), CDKN2A(1) +5 more
0.067 0.132 2.80e-15 4.05e-14 ✓ sig. Cluster 5 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.