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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Anemia Thrombocytopenia
14 genes
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10 of 14 corroborated by 2+ sources
EPO(3), MTHFR(2), TNF(2), CSF2(2), ASPG(2), HBS1L(1), CSF3(2), GATA1(3), IFNA2(1), IL3(2), ITPA(2), JAK2(1) +2 more
0.067 0.167 2.27e-14 3.10e-13 ✓ sig. —
46,xy gonadal dysgenesis 46,xy partial gonadal dysgenesis
5 genes
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3 of 5 corroborated by 2+ sources
NR5A1(2), SOX9(1), SRY(1), DHX37(2), MAP3K1(2)
0.263 0.625 2.33e-14 3.17e-13 ✓ sig. Cluster 38 →
Anemia Hematologic disease
8 genes
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3 of 8 corroborated by 2+ sources
H2BC4(1), HFE(1), MTHFR(2), HBS1L(1), H1-2(1), HOXD13(2), JAK2(1), NUP98(2)
0.084 0.444 2.33e-14 3.18e-13 ✓ sig. —
Astrocytoma Attention deficit hyperactivity disorder
62 genes
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8 of 62 corroborated by 2+ sources
ZFPM2(1), TEAD1(1), ANO3(1), BRAF(2), C6orf118(1), CADM2(1), CTNNA2(1), CTNNA3(1), DAB1(1), EFL1(1), ESR2(2), ESRRB(1) +50 more
0.046 0.206 2.35e-14 3.20e-13 ✓ sig. —
Congenital contractural arachnodactyly familial thoracic aortic aneurysm and aortic dissection
6 genes
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6 of 6 corroborated by 2+ sources
FBN1(3), TGFB2(2), BGN(2), LOX(2), MFAP5(2), TGFB3(2)
0.167 0.500 2.36e-14 3.20e-13 ✓ sig. Cluster 12 →
Henoch schoenlein purpura Pemphigus vulgaris
5 genes
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2 of 5 corroborated by 2+ sources
0.238 0.714 2.49e-14 3.39e-13 ✓ sig. Cluster 1 →
Memory disorders Seizures
12 genes
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11 of 12 corroborated by 2+ sources
CHRNA7(2), INS(2), HTR1A(2), ACHE(2), IL1B(2), NPY(2), SIGMAR1(1), DRD2(2), SLC17A7(2), CNR1(2), CHRM1(2), GABRA5(2)
0.066 0.235 2.53e-14 3.44e-13 ✓ sig. —
Chronic obstructive pulmonary disease Sepsis
8 genes
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8 of 8 corroborated by 2+ sources
NOS3(2), TLR4(2), TNF(2), IL6(2), TGFB1(2), MMP9(2), NOS2(2), MIF(2)
0.116 0.235 2.60e-14 3.53e-13 ✓ sig. —
Hypoglycemia Maturity-onset diabetes of the young
6 genes
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6 of 6 corroborated by 2+ sources
INS(3), ABCC8(5), HNF4A(2), KCNJ11(2), GCK(2), HNF1A(3)
0.171 0.462 2.72e-14 3.70e-13 ✓ sig. Cluster 36 →
Combined pituitary hormone deficiency Panhypopituitarism
6 genes
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5 of 6 corroborated by 2+ sources
HESX1(3), OTX2(3), LHX3(1), LHX4(3), POU1F1(3), PROP1(4)
0.128 0.667 2.75e-14 3.73e-13 ✓ sig. —
Thrombophilia Thrombosis
8 genes
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8 of 8 corroborated by 2+ sources
FGA(3), F2(6), PLAT(4), F5(6), PROC(5), PROS1(5), THBD(3), F9(6)
0.114 0.250 2.75e-14 3.73e-13 ✓ sig. Cluster 55 →
Retinal detachment Retinopathy
9 genes
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3 of 9 corroborated by 2+ sources
WWOX(1), ABCA4(2), ANKRD7(1), COL22A1(1), CFH(2), CLSTN2(1), EYS(3), FAT3(1), RDH5(1)
0.100 0.196 2.76e-14 3.74e-13 ✓ sig. Cluster 187 →
Corneal dystrophy Polymorphous corneal dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
COL8A2(5), OVOL2(3), VSX1(2), GRHL2(3), ZEB1(5)
0.152 1.000 2.79e-14 3.78e-13 ✓ sig. Cluster 75 →
Corneal dystrophy Posterior polymorphous corneal dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
COL8A2(6), OVOL2(6), VSX1(5), GRHL2(5), ZEB1(6)
0.152 1.000 2.79e-14 3.78e-13 ✓ sig. Cluster 75 →
Anterior segment dysgenesis Axenfeld-rieger syndrome
5 genes
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4 of 5 corroborated by 2+ sources
COL4A1(2), FOXC1(7), PAX6(4), PITX2(7), IFT140(1)
0.200 0.833 2.80e-14 3.78e-13 ✓ sig. —
Aortic dissection Ehlers-danlos syndrome
7 genes
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6 of 7 corroborated by 2+ sources
FBN1(2), SMAD3(2), COL1A1(7), COL3A1(7), TGFBR1(2), TGFBR2(2), LOX(1)
0.125 0.389 2.93e-14 3.96e-13 ✓ sig. —
Aicardi goutieres syndrome Interferonopathy
4 genes
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4 of 4 corroborated by 2+ sources
RNASEH2A(3), RNASEH2B(3), RNASEH2C(2), SAMHD1(3)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. Cluster 150 →
Hemophagocytic lymphohistiocytosis Hereditary hemophagocytic lymphohistiocytosis
4 genes
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4 of 4 corroborated by 2+ sources
PRF1(7), UNC13D(8), STX11(6), STXBP2(7)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. —
Carney-stratakis syndrome Paraganglioma
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(6), SDHD(6), SDHA(2), SDHC(6)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. Cluster 81 →
Carney-stratakis syndrome Pheochromocytoma/paraganglioma syndrome
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(6), SDHD(5), SDHA(5), SDHC(6)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. Cluster 81 →
Bare lymphocyte syndrome MHC class II deficiency
4 genes
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4 of 4 corroborated by 2+ sources
CIITA(3), RFX5(2), RFXANK(2), RFXAP(2)
0.444 1.000 2.99e-14 4.02e-13 ✓ sig. —
Mood disorder Psychotic disorders
21 genes
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6 of 21 corroborated by 2+ sources
TBX1(1), ANK3(1), TCF4(2), BDNF(2), GLUL(1), MAOA(1), HTR1B(2), TGFB1(1), CACNA1C(1), CRHR1(1), TRPM2(1), NR3C1(2) +9 more
0.052 0.168 3.05e-14 4.10e-13 ✓ sig. —
Male infertility Male infertility single gene azoospermia
14 genes
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13 of 14 corroborated by 2+ sources
NR5A1(4), DMRT1(2), TDRD9(2), CFTR(3), DNAH10(2), MOV10L1(2), SYCP3(2), PIWIL2(2), HORMAD1(2), PNLDC1(2), SHOC1(2), M1AP(1) +2 more
0.068 0.131 3.07e-14 4.13e-13 ✓ sig. Cluster 31 →
Cockayne syndrome Uv-sensitive syndrome
4 genes
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2 of 4 corroborated by 2+ sources
ERCC8(8), NDUFAF2(1), ERCC6(7), PGBD3(1)
0.500 0.800 3.20e-14 4.30e-13 ✓ sig. —
46,xx ovotesticular disorder of sex development 46,xx sex reversal
4 genes
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4 of 4 corroborated by 2+ sources
NR5A1(2), SOX3(2), SOX9(2), SRY(2)
0.500 0.800 3.20e-14 4.30e-13 ✓ sig. Cluster 38 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.