Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Endometriosis Major depressive disorder
116 genes
Show details
59 of 116 corroborated by 2+ sources
ETV6(1), ANO4(3), ASCC1(1), BSN(1), C6orf118(1), CACNA1A(1), CAMK1D(1), COP1(1), EGFR(2), ERBB4(1), ESR2(3), ETV1(1) +104 more
0.052 0.309 7.82e-21 1.55e-19 ✓ sig. —
Dementia Scoliosis
105 genes
Show details
1 of 105 corroborated by 2+ sources
ADAMTS1(1), ANK3(1), ASB3(1), CCDC171(1), CCDC91(1), CHN2(1), CNTNAP2(1), CRADD(1), CSMD1(1), CYYR1(1), DGKB(1), DLG2(1) +93 more
0.069 0.178 8.94e-21 1.77e-19 ✓ sig. Cluster 2 →
Cannabis abuse Obsessive-compulsive disorder
24 genes
Show details
3 of 24 corroborated by 2+ sources
COMT(1), ABT1(1), BANK1(1), CTNND1(1), EPHX2(1), LSAMP(1), PDE4B(1), PTPRF(1), SEMA6D(1), SLC39A8(1), TCF20(1), TENM2(1) +12 more
0.073 0.207 9.00e-21 1.78e-19 ✓ sig. —
Aplasia of the vermis Bardet-biedl syndrome
13 genes
Show details
7 of 13 corroborated by 2+ sources
KIF7(1), USH2A(1), WDPCP(7), RPGRIP1L(1), NPHP3(1), TMEM67(3), NPHP1(3), CEP290(5), IFT172(5), TTC21B(1), IFT74(6), MKS1(5) +1 more
0.129 0.241 9.16e-21 1.81e-19 ✓ sig. Cluster 8 →
Myositis Sjogren syndrome
14 genes
Show details
9 of 14 corroborated by 2+ sources
DGKQ(3), HLA-DQA1(2), HLA-DRA(1), HLA-DRB1(2), TNIP1(3), HLA-DQB1(2), ATG5(1), IRF5(1), PTPN22(2), TNFAIP3(3), IL1RN(2), STAT4(3) +2 more
0.118 0.230 9.59e-21 1.89e-19 ✓ sig. Cluster 25 →
Congenital nonspherocytic hemolytic anemia Hemolytic anemia
9 genes
Show details
9 of 9 corroborated by 2+ sources
GCLC(3), GSR(6), G6PD(6), GATA1(2), HK1(4), PKLR(3), AK1(5), GPI(6), NT5C3A(6)
0.153 0.750 1.04e-20 2.04e-19 ✓ sig. —
Cornelia de lange syndrome De lange syndrome
6 genes
Show details
6 of 6 corroborated by 2+ sources
HDAC8(7), SMC1A(5), SMC3(7), NIPBL(6), BRD4(6), RAD21(7)
0.545 1.000 1.14e-20 2.24e-19 ✓ sig. Cluster 297 →
Amelogenesis imperfecta Hypomaturation amelogenesis imperfecta
7 genes
Show details
7 of 7 corroborated by 2+ sources
SLC24A4(6), AMELX(7), GPR68(6), KLK4(6), MMP20(6), ODAPH(6), WDR72(7)
0.269 1.000 1.18e-20 2.33e-19 ✓ sig. Cluster 366 →
Infantile spasms West syndrome
8 genes
Show details
CRH(1), POMC(1), STXBP1(1), TSC2(1), TSC1(1), UPB1(1), HSD17B4(1), MC2R(1)
0.235 0.727 1.23e-20 2.42e-19 ✓ sig. Cluster 328 →
Hereditary breast cancer Lynch syndrome
11 genes
Show details
11 of 11 corroborated by 2+ sources
CHEK2(4), EPCAM(8), MSH2(7), MSH6(8), ATM(3), MRE11(2), PALB2(3), PIK3CA(3), PMS2(6), MLH1(8), MUTYH(2)
0.155 0.344 1.24e-20 2.44e-19 ✓ sig. —
Azoospermia Male infertility single gene azoospermia
13 genes
Show details
12 of 13 corroborated by 2+ sources
DDX25(2), C14orf39(2), MSH5(2), FANCM(2), TDRD9(2), CFTR(3), GCNA(2), MCMDC2(1), MEIOB(2), MOV10L1(2), PDHA2(2), SYCP3(3) +1 more
0.102 0.406 1.29e-20 2.53e-19 ✓ sig. Cluster 31 →
Keratinocyte carcinoma Seborrheic keratosis
12 genes
Show details
TERT(1), BNC2(1), RALY(1), IRF4(1), KRT5(1), LPP(1), TYR(1), DEF8(1), CASP8(1), CPVL(1), FLACC1(1), SLC45A2(1)
0.124 0.387 1.30e-20 2.56e-19 ✓ sig. Cluster 29 →
Limb girdle muscular dystrophy Walker-warburg syndrome
9 genes
Show details
9 of 9 corroborated by 2+ sources
DAG1(4), GMPPB(4), CRPPA(5), POMT1(4), POMT2(5), POMGNT1(4), FKRP(5), FKTN(5), POMK(5)
0.196 0.563 1.38e-20 2.70e-19 ✓ sig. Cluster 14 →
Megaloblastic anemia Vitamin b deficiency
7 genes
Show details
4 of 7 corroborated by 2+ sources
FUT2(2), TCN2(3), CUBN(2), AMN(1), TCN1(2), MMAA(1), OOSP3(1)
0.389 0.583 1.54e-20 3.01e-19 ✓ sig. Cluster 106 →
Brugada syndrome Cardiac arrest
11 genes
Show details
9 of 11 corroborated by 2+ sources
CACNB2(6), SLMAP(4), TRPM4(4), DSP(1), RYR2(1), SCN5A(8), ANK2(3), HCN4(7), CACNA2D1(4), AKAP9(2), KCNJ8(4)
0.139 0.423 1.58e-20 3.08e-19 ✓ sig. Cluster 4 →
Oligodendroglioma Scoliosis
101 genes
Show details
1 of 101 corroborated by 2+ sources
WWOX(1), ADGRB3(1), ALCAM(1), ANK3(1), C6orf118(1), CDH13(1), CHN2(1), CNTNAP2(1), DAB1(1), DCC(1), DEPTOR(1), DGKB(1) +89 more
0.068 0.181 1.67e-20 3.27e-19 ✓ sig. Cluster 2 →
Color vision deficiency Oligodendroglioma
97 genes
Show details
SOX5(1), WWOX(1), AGBL1(1), C6orf118(1), CADPS(1), CAMK1D(1), CDH13(1), CPNE4(1), DAB1(1), DOCK4(1), EGLN3(1), FBXL7(1) +85 more
0.068 0.174 1.68e-20 3.28e-19 ✓ sig. Cluster 2 →
Hypercholesterolemia Ischemic heart disease
16 genes
Show details
11 of 16 corroborated by 2+ sources
APOA1(1), ABCA1(2), APOB(6), APOE(2), EPHX2(3), LDLR(6), LIPC(1), HMGCR(2), LPL(2), PON1(2), PON2(1), ABCG5(1) +4 more
0.080 0.348 1.77e-20 3.45e-19 ✓ sig. —
Neurotic disorder Psychiatric disorders
39 genes
Show details
1 of 39 corroborated by 2+ sources
B3GALT1(1), CAMTA1(1), CTNNA3(1), DCC(1), ERBB4(1), FAM135B(1), GABBR1(1), IGSF11(1), LSAMP(1), MAPT(2), RBMS3(1), SORCS3(1) +27 more
0.063 0.178 1.79e-20 3.49e-19 ✓ sig. —
46,xy gonadal dysgenesis Swyer syndrome
7 genes
Show details
7 of 7 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(2), CBX2(2), DHH(2), DHX37(2), MAP3K1(2)
0.368 0.700 1.90e-20 3.69e-19 ✓ sig. Cluster 38 →
Macular and posterior pole degeneration Retinopathy
9 genes
Show details
CFI(1), C3(1), CD46(1), PDGFB(1), RPL3(1), CETP(1), CFH(1), RDH5(1), ARMS2(1)
0.158 0.692 1.95e-20 3.78e-19 ✓ sig. Cluster 187 →
Arthrogryposis multiplex congenita Distal arthrogryposis
10 genes
Show details
8 of 10 corroborated by 2+ sources
PIEZO2(4), RYR1(1), ECEL1(5), MYH3(5), TPM2(5), CNTNAP1(1), MYH8(2), NALCN(2), TNNI2(5), TNNT3(5)
0.127 0.625 2.04e-20 3.96e-19 ✓ sig. —
Hypersensitivity Rhinitis
14 genes
Show details
14 of 14 corroborated by 2+ sources
CCL24(2), HLA-DQA1(2), MS4A2(2), IL10(2), IL1B(2), IL4(2), TNF(2), HLA-DQB1(2), ALB(2), IFNG(2), IL17A(2), CCR2(2) +2 more
0.115 0.215 2.06e-20 4.00e-19 ✓ sig. Cluster 16 →
Focal glomerulosclerosis Focal segmental glomerulosclerosis
11 genes
Show details
10 of 11 corroborated by 2+ sources
ACTN4(3), ARHGAP24(1), CD2AP(5), MYO1E(4), PAX2(4), TRPC6(5), APOL1(4), TRIM8(4), ANLN(4), CRB2(5), INF2(5)
0.145 0.379 2.11e-20 4.09e-19 ✓ sig. Cluster 30 →
Hyperalgesia Hypotension
15 genes
Show details
AGT(1), GRIN2B(1), IL1A(1), IL1B(1), TNF(1), AVP(1), IL6(1), PDYN(1), TAC1(1), KNG1(1), BDKRB2(1), CNR1(1) +3 more
0.106 0.224 2.12e-20 4.10e-19 ✓ sig. Cluster 13 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.