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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autosomal recessive limb-girdle muscular dystrophy Muscular dystrophy
13 genes
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13 of 13 corroborated by 2+ sources
SGCA(2), HMGCR(2), TRAPPC11(2), ANO5(2), SGCD(2), DYSF(2), SGCG(2), TCAP(2), POPDC3(2), CAPN3(2), JAG2(2), SGCB(2) +1 more
0.245 0.929 1.52e-32 5.06e-31 ✓ sig. Cluster 14 →
Connective tissue disease Thoracic aortic aneurysm and aortic dissection
20 genes
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12 of 20 corroborated by 2+ sources
FBN1(5), NOTCH1(2), COL5A1(1), FBN2(3), PRKG1(4), FLNA(3), SMAD3(5), ACTA2(5), COL1A1(1), COL3A1(1), MYH11(5), NDE1(1) +8 more
0.144 0.488 1.76e-32 5.86e-31 ✓ sig. Cluster 12 →
Asthma Endometriosis
99 genes
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40 of 99 corroborated by 2+ sources
GATA4(1), PTEN(3), ETV6(1), RUNX1(1), AFF3(1), C6orf118(1), CDK2AP1(1), CLIC4(1), COL12A1(1), DDX6(1), ERBB4(1), ETS1(1) +87 more
0.074 0.263 2.10e-32 6.94e-31 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection Thoracic aortic aneurysm and aortic dissection
12 genes
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12 of 12 corroborated by 2+ sources
FBN1(5), PRKG1(4), TGFB2(4), FLNA(3), BGN(4), FOXE3(5), MYH11(5), LOX(5), MYLK(5), MFAP5(4), TGFB3(4), MAT2A(4)
0.286 1.000 2.14e-32 7.08e-31 ✓ sig. Cluster 12 →
Loeys-dietz syndrome Thoracic aortic aneurysm and aortic dissection
13 genes
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10 of 13 corroborated by 2+ sources
FBN1(5), COL5A1(1), FBN2(3), TGFB2(7), SMAD3(7), COL3A1(1), MYH11(5), TGFBR1(7), TGFBR2(7), MYLK(5), TGFB3(6), SMAD2(7) +1 more
0.289 0.813 2.25e-32 7.42e-31 ✓ sig. Cluster 12 →
Immunodeficiency Severe combined immunodeficiency
22 genes
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21 of 22 corroborated by 2+ sources
CARD11(6), LAT(6), ZAP70(3), TFRC(3), CORO1A(7), IL7R(6), CD3E(6), PTPRC(5), CD247(5), PRKDC(7), CD3D(6), STK4(3) +10 more
0.130 0.431 2.33e-32 7.69e-31 ✓ sig. Cluster 10 →
Cardiomegaly Congestive heart failure
27 genes
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27 of 27 corroborated by 2+ sources
ATP2A2(2), AGT(2), PIK3CG(2), REN(2), NOS3(2), GSK3B(2), HMOX1(2), IL1B(2), SOD2(2), STAT3(2), TNF(2), POMC(2) +15 more
0.114 0.321 3.28e-32 1.08e-30 ✓ sig. —
Color vision deficiency Major depressive disorder
254 genes
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51 of 254 corroborated by 2+ sources
SOX5(1), CASZ1(1), DMRT1(1), WWOX(1), PDE4D(2), DOCK6(1), AMPD3(1), ASB3(1), AUTS2(1), C12orf42(1), C6orf118(1), CACNA1A(1) +242 more
0.095 0.263 3.40e-32 1.12e-30 ✓ sig. Cluster 2 →
Pharyngeal disorder Upper respiratory tract disorder
13 genes
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IKZF1(1), TET2(1), TNFRSF13B(1), NEK6(1), IL7R(1), LTBR(1), NFKB1(1), KRT19(1), FBXO33(1), ADAM23(1), KLHL1(1), ZBTB7A(1) +1 more
0.333 0.650 3.63e-32 1.19e-30 ✓ sig. Cluster 137 →
Hemorrhagic disease Thrombocytopenia
17 genes
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4 of 17 corroborated by 2+ sources
JMJD1C(1), THPO(4), HBS1L(1), THADA(1), JAK2(1), TPM4(2), ARHGEF3(1), BAK1(1), CDKN2A(1), TUBB1(2), SIRPA(1), PNPLA3(1) +5 more
0.118 0.810 3.71e-32 1.22e-30 ✓ sig. Cluster 33 →
46,xy gonadal dysgenesis Gonadal dysgenesis
12 genes
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11 of 12 corroborated by 2+ sources
BMP15(2), BNC1(2), FSHR(2), MRPS22(1), NR5A1(3), NUP107(2), POLR3H(2), PSMC3IP(2), SPIDR(2), SRY(3), DHH(2), DHX37(2)
0.375 0.800 3.74e-32 1.22e-30 ✓ sig. Cluster 38 →
Attention deficit hyperactivity disorder Scoliosis
183 genes
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14 of 183 corroborated by 2+ sources
COMT(3), GBE1(1), CDH2(4), ADGRL2(1), AFF3(1), AKAP6(1), ALCAM(1), ANK3(1), ANO4(1), ARFGEF2(1), ASCC2(1), BNC2(1) +171 more
0.094 0.177 4.01e-32 1.31e-30 ✓ sig. Cluster 2 →
Major depressive disorder Scoliosis
266 genes
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57 of 266 corroborated by 2+ sources
COMT(2), WWOX(1), COL2A1(2), PDE4D(2), SH2B3(1), ETV6(1), AMPD3(1), GFAP(1), ADARB2(1), AKAP6(1), ALCAM(1), ANK3(1) +254 more
0.098 0.258 4.05e-32 1.32e-30 ✓ sig. Cluster 2 →
Macular and posterior pole degeneration Macular degeneration
13 genes
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6 of 13 corroborated by 2+ sources
CFI(3), HERC2(1), C3(3), CD46(1), PDGFB(1), RPL3(1), CETP(1), CFH(3), RDH5(1), ARMS2(3), C9(3), SKIC2(1) +1 more
0.191 1.000 5.80e-32 1.89e-30 ✓ sig. Cluster 187 →
Costello syndrome Noonan syndrome
12 genes
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10 of 12 corroborated by 2+ sources
BRAF(7), KRAS(8), NRAS(7), SHOC2(7), RAF1(7), PTPN11(7), SOS1(7), MAP2K1(6), HRAS(6), MAP2K2(4), SPRED1(1), LRRC56(1)
0.308 0.923 6.51e-32 2.12e-30 ✓ sig. Cluster 42 →
Crigler-najjar syndrome Perinatal disease
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(7), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.818 1.000 7.47e-32 2.42e-30 ✓ sig. Cluster 260 →
Crigler-najjar syndrome Gilbert syndrome
9 genes
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1 of 9 corroborated by 2+ sources
UGT1A10(1), UGT1A8(1), UGT1A9(1), UGT1A1(6), UGT1A6(1), UGT1A3(1), UGT1A4(1), UGT1A5(1), UGT1A7(1)
0.818 1.000 7.47e-32 2.42e-30 ✓ sig. Cluster 260 →
Lucey-driscoll syndrome Perinatal disease
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(3), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.818 1.000 7.47e-32 2.42e-30 ✓ sig. Cluster 260 →
Gilbert syndrome Lucey-driscoll syndrome
9 genes
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1 of 9 corroborated by 2+ sources
UGT1A10(1), UGT1A8(1), UGT1A9(1), UGT1A1(4), UGT1A6(1), UGT1A3(1), UGT1A4(1), UGT1A5(1), UGT1A7(1)
0.818 1.000 7.47e-32 2.42e-30 ✓ sig. Cluster 260 →
Hereditary parkinson disease Parkinson disease
24 genes
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22 of 24 corroborated by 2+ sources
HLA-DRA(3), LRRK2(7), MAPT(5), PRKN(8), GSTP1(2), ND1(1), SNCA(8), ATXN2(3), ATXN3(3), PARK7(8), GIGYF2(5), NR4A2(4) +12 more
0.045 0.857 7.89e-32 2.55e-30 ✓ sig. —
Keratinocyte carcinoma Skin disease
26 genes
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TERT(1), BNC2(1), CUX1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), MYL10(1), SPMIP7(1), TRPS1(1), RALY(1), IRF4(1), KRT5(1) +14 more
0.114 0.338 7.92e-32 2.55e-30 ✓ sig. Cluster 29 →
Cardiofaciocutaneous syndrome Costello syndrome
10 genes
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10 of 10 corroborated by 2+ sources
BRAF(7), KRAS(8), NRAS(3), SHOC2(2), RAF1(2), PTPN11(3), SOS1(2), MAP2K1(7), HRAS(6), MAP2K2(8)
0.625 0.833 9.17e-32 2.95e-30 ✓ sig. Cluster 42 →
Neuropathy, ataxia, and retinitis pigmentosa Postaxial polydactyly
11 genes
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1 of 11 corroborated by 2+ sources
ND1(1), ND2(1), ATP6(2), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.458 0.846 9.54e-32 3.06e-30 ✓ sig. Cluster 32 →
Distal hereditary motor neuropathy Spinal muscular atrophy
15 genes
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15 of 15 corroborated by 2+ sources
TRPV4(4), VRK1(3), SIGMAR1(4), BICD2(4), DYNC1H1(5), ATP7A(3), HSPB1(6), REEP1(7), PLEKHG5(4), GARS1(6), HSPB8(6), IGHMBP2(4) +3 more
0.254 0.417 1.03e-31 3.30e-30 ✓ sig. Cluster 15 →
Ventricular fibrillation Wolff-parkinson-white syndrome
16 genes
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2 of 16 corroborated by 2+ sources
ACTN2(1), JUP(1), RBM20(1), TRPM4(1), DSP(1), DPP6(3), KCNJ2(1), CACNA1C(1), MYH6(1), KCNH2(1), RYR2(1), SCN5A(3) +4 more
0.222 0.444 1.06e-31 3.40e-30 ✓ sig. Cluster 4 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.