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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Macrogyria Microgyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.567 1.000 1.21e-49 6.29e-48 ✓ sig. Cluster 109 →
Calcinosis Heart valve prolapse
21 genes
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21 of 21 corroborated by 2+ sources
NOTCH1(2), COL18A1(2), SPP1(2), CASP3(2), IL1B(2), JAK2(2), CCL2(2), COL1A1(2), TIMP1(2), FCGR1A(2), IL18(2), LCN2(2) +9 more
0.382 0.724 1.76e-49 9.14e-48 ✓ sig. Cluster 370 →
Basal cell carcinoma Melanoma
77 genes
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21 of 77 corroborated by 2+ sources
ANKRD11(1), RAI1(2), TERT(5), TP53(3), TPCN2(1), ASIP(2), BNC2(2), EPB41L1(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1) +65 more
0.112 0.235 2.38e-49 1.23e-47 ✓ sig. Cluster 23 →
Hyperlipidemia Hyperlipoproteinemia
28 genes
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24 of 28 corroborated by 2+ sources
ABCA1(3), ABCG8(2), APOB(3), APOC2(2), APOE(6), LDLR(3), LIPC(6), NOS3(2), ADRB3(2), GCG(2), HMGCR(2), HSPA1B(1) +16 more
0.182 0.700 2.52e-49 1.30e-47 ✓ sig. Cluster 51 →
Focal glomerulosclerosis Nephrotic syndrome
32 genes
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14 of 32 corroborated by 2+ sources
WT1(4), COL4A5(1), COL4A4(1), ACTN4(1), AGT(2), ARHGAP24(1), LAMB2(3), MYO1E(1), PAX2(1), PTPRO(4), SERPINE1(2), TRPC6(1) +20 more
0.167 0.561 3.76e-49 1.93e-47 ✓ sig. Cluster 24 →
Biliary cirrhosis Liver cirrhosis
46 genes
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43 of 46 corroborated by 2+ sources
HLA-DQA1(1), NOS3(2), NFE2L2(2), RELA(2), HLA-DQB1(2), VDR(1), ALB(2), HIF1A(2), ATG5(3), TGFB1(2), HLA-DPB1(1), CLEC16A(3) +34 more
0.133 0.359 4.56e-49 2.34e-47 ✓ sig. Cluster 285 →
Metabolic syndrome Substance abuse
157 genes
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8 of 157 corroborated by 2+ sources
SOX5(1), BPTF(1), GBE1(1), BRWD1(1), CACNA1D(1), ADGRL2(1), AFF3(1), AHCYL1(1), AKAP6(1), ALCAM(1), ARHGAP15(1), AUTS2(1) +145 more
0.094 0.304 5.38e-49 2.75e-47 ✓ sig. Cluster 2 →
Hydranencephaly Macrogyria
18 genes
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1 of 18 corroborated by 2+ sources
CASK(1), ARL3(1), NDE1(3), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1) +6 more
0.529 0.818 6.89e-49 3.52e-47 ✓ sig. Cluster 109 →
Microphthalmia Microphthalmos
21 genes
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21 of 21 corroborated by 2+ sources
RARB(7), TENM3(4), SHH(5), PRSS56(3), PAX6(2), SOX2(3), STRA6(3), OTX2(3), PORCN(2), RAX(3), VAX1(4), VSX2(6) +9 more
0.389 0.583 9.45e-49 4.81e-47 ✓ sig. Cluster 54 →
Melanoma Non-melanoma skin carcinoma
59 genes
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10 of 59 corroborated by 2+ sources
ANKRD11(1), TP53(2), ASIP(2), BNC2(1), CDH15(1), EPB41L1(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), ICOS(1), RHOU(1) +47 more
0.108 0.349 9.69e-49 4.92e-47 ✓ sig. Cluster 23 →
Atherosclerosis Myocardial ischemia
50 genes
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39 of 50 corroborated by 2+ sources
APOA1(2), ABCA1(2), AGT(2), APOB(2), APOC1(1), APOE(3), HDAC9(3), LDLR(3), SERPINE1(2), SMARCA4(1), TCF7L2(3), VEGFA(2) +38 more
0.108 0.420 1.65e-48 8.35e-47 ✓ sig. Cluster 6 →
Semilobar holoprosencephaly Syntelencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(2), CDON(2), GLI2(2), SHH(2), PTCH1(2), SIX3(2), GAS1(2), ZIC2(2), DLL1(2), STIL(2), DISP1(2), CRIPTO(2) +3 more
0.789 1.000 1.66e-48 8.35e-47 ✓ sig. Cluster 96 →
Semilobar holoprosencephaly Septopreoptic holoprosencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(2), CDON(2), GLI2(2), SHH(2), PTCH1(2), SIX3(2), GAS1(2), ZIC2(2), DLL1(2), STIL(2), DISP1(2), CRIPTO(2) +3 more
0.789 1.000 1.66e-48 8.35e-47 ✓ sig. Cluster 96 →
Hypertrophic cardiomyopathy Long qt syndrome
42 genes
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27 of 42 corroborated by 2+ sources
BRAF(1), CACNB2(1), DSG2(1), JUP(1), PKP2(1), RBM20(3), TRPM4(1), POMC(2), DSP(2), KCNJ2(2), KCNJ5(7), CACNA1C(6) +30 more
0.132 0.412 2.03e-48 1.02e-46 ✓ sig. Cluster 3 →
Avascular necrosis of bone Osteonecrosis of medial femoral condyle
14 genes
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CAT(1), COL2A1(1), TRPV4(1), NOS3(1), F2(1), GSTT1(1), GSTM1(1), PLAT(1), F5(1), IL23R(1), ABCB1(1), MMP2(1) +2 more
0.933 1.000 2.08e-48 1.04e-46 ✓ sig. Cluster 29 →
Holoprosencephaly Semilobar holoprosencephaly
17 genes
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17 of 17 corroborated by 2+ sources
FGF8(3), CDON(6), GLI2(6), SHH(5), PTCH1(7), SIX3(6), FGFR1(3), GAS1(5), ZIC2(6), DLL1(3), STIL(3), STAG2(4) +5 more
0.548 0.944 2.18e-48 1.09e-46 ✓ sig. Cluster 96 →
Distal hereditary motor neuropathy Distal spinal muscular atrophy
20 genes
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18 of 20 corroborated by 2+ sources
SETX(3), TRPV4(3), VRK1(3), SIGMAR1(4), DCTN1(7), DYNC1H1(2), NEFL(1), BSCL2(6), HSPB1(6), BAG3(4), PLEKHG5(3), GARS1(6) +8 more
0.417 0.645 2.69e-48 1.34e-46 ✓ sig. Cluster 12 →
Transitional cell carcinoma Urinary bladder neoplasms
26 genes
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FGFR3(1), TP53(1), ARID1A(1), ESR2(1), KMT2C(1), TACC3(1), IGFBP3(1), TNF(1), PTGS2(1), CREBBP(1), CSF3(1), GPX1(1) +14 more
0.173 0.788 4.40e-48 2.19e-46 ✓ sig. —
Cardiovascular disease Heart failure
88 genes
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34 of 88 corroborated by 2+ sources
CASZ1(1), ZFPM2(1), SH2B3(1), CACNA1D(1), ACE(3), ADRA1D(3), AGT(3), ALDH1A2(1), APOB(3), APOE(3), CACNB2(1), CRTC1(1) +76 more
0.108 0.204 5.25e-48 2.61e-46 ✓ sig. Cluster 6 →
Long qt syndrome Ventricular fibrillation
25 genes
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10 of 25 corroborated by 2+ sources
CACNB2(1), DSG2(1), JUP(1), KCNE2(7), PKP2(1), RBM20(1), TRPM4(1), DSP(1), DPP6(3), KCNJ2(2), CACNA1C(6), MYH6(1) +13 more
0.219 0.694 7.92e-48 3.93e-46 ✓ sig. Cluster 3 →
Joubert syndrome Meckel-gruber syndrome
22 genes
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21 of 22 corroborated by 2+ sources
RPGRIP1(2), CC2D2A(5), RPGRIP1L(5), NPHP3(2), TMEM67(6), CEP290(6), TMEM138(6), TMEM216(6), TMEM231(5), TMEM237(6), KIAA0586(5), TCTN1(7) +10 more
0.314 0.667 9.10e-48 4.50e-46 ✓ sig. Cluster 8 →
Combined immunodeficiency disease Immunodeficiency
28 genes
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28 of 28 corroborated by 2+ sources
CARD11(7), ORAI1(4), RELB(6), ZAP70(7), IRF4(5), MSN(7), TFRC(4), MST1(2), TNFRSF4(7), BCL11B(4), IL6ST(4), STIM1(5) +16 more
0.179 0.636 1.17e-47 5.79e-46 ✓ sig. Cluster 11 →
Microform holoprosencephaly Semilobar holoprosencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(2), CDON(2), GLI2(2), SHH(2), PTCH1(2), SIX3(2), FGFR1(2), GAS1(2), ZIC2(2), DLL1(2), DISP1(2), CRIPTO(2) +3 more
0.750 0.938 2.65e-47 1.30e-45 ✓ sig. Cluster 96 →
Charcot-marie-tooth disease Distal hereditary motor neuropathy
26 genes
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25 of 26 corroborated by 2+ sources
SETX(4), SORD(7), TRPV4(6), SIGMAR1(3), BICD2(1), DCTN1(7), DYNC1H1(6), FIG4(7), NEFL(7), ATP7A(3), LMNA(5), BSCL2(6) +14 more
0.182 0.722 3.17e-47 1.56e-45 ✓ sig. Cluster 12 →
Hypertension Major depressive disorder
321 genes
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117 of 321 corroborated by 2+ sources
CYP17A1(1), BPTF(1), CASZ1(1), RERE(1), COMT(1), ZFPM2(1), CAT(3), ATP2A2(2), SH2B3(1), TERT(2), AMPD3(1), ACE(2) +309 more
0.115 0.279 3.89e-47 1.91e-45 ✓ sig. —

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.