Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 11
27
Diseases
411
Unique genes
0.067
Avg. similarity score
Spermatogenic failure
Most-connected disease (13 links)
Disease
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Spermatogenic failure
Congenital impairment of spermatozoa motility
Teratozoospermia
Male infertility single gene azoospermia
Male infertility large polyploid spermatozoa
Azoospermia
Male infertility
Male infertility spermatogenesis disorder
Premature ovarian failure
Spermatogenic failure, x-linked
Testicular azoospermia
primary ciliary dyskinesia
spermatogenic failure 38
spermatogenic failure 5
spermatogenic failure 56
SYCE1-related gametogenic failure
spermatogenic failure 18
spermatogenic failure 39
Male infertility teratozoospermia
Synovial sarcoma
spermatogenic failure 46
spermatogenic failure, x-linked, 3
Congenital alpha-fetoprotein deficiency
Ruijs-aalfs syndrome
X-linked intellectual disability, Cabezas type
Young syndrome
ciliary dyskinesia, primary, 45
Member diseases (most connected first ‐ the cluster's core)
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| DNAH10 | 7 / 27 | Male infertility, Male infertility large polyploid spermatozoa, Male infertility single gene azoospermia, primary ciliary dyskinesia and 3 more |
| ARMC2 | 5 / 27 | Congenital impairment of spermatozoa motility, Male infertility spermatogenesis disorder, Spermatogenic failure, spermatogenic failure 38 and 1 more |
| AURKC | 5 / 27 | Male infertility, Male infertility large polyploid spermatozoa, Male infertility spermatogenesis disorder, Spermatogenic failure and 1 more |
| C14ORF39 | 5 / 27 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure and 1 more |
| DNAH1 | 5 / 27 | Congenital impairment of spermatozoa motility, primary ciliary dyskinesia, Spermatogenic failure, spermatogenic failure 18 and 1 more |
| FANCM | 5 / 27 | Azoospermia, Male infertility single gene azoospermia, Male infertility spermatogenesis disorder, Premature ovarian failure and 1 more |
| MOV10L1 | 5 / 27 | Azoospermia, Male infertility, Male infertility single gene azoospermia, Spermatogenic failure and 1 more |
| MSH5 | 5 / 27 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure and 1 more |
| NR5A1 | 5 / 27 | Male infertility, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure and 1 more |
| CFAP43 | 4 / 27 | Congenital impairment of spermatozoa motility, primary ciliary dyskinesia, Spermatogenic failure, Teratozoospermia |
| DMRT1 | 4 / 27 | Male infertility, Male infertility single gene azoospermia, spermatogenic failure, Testicular azoospermia |
| DNAH17 | 4 / 27 | Congenital impairment of spermatozoa motility, Male infertility spermatogenesis disorder, Spermatogenic failure, spermatogenic failure 39 |
| DNHD1 | 4 / 27 | Male infertility large polyploid spermatozoa, Male infertility single gene azoospermia, Male infertility spermatogenesis disorder, Spermatogenic failure |
| GCNA | 4 / 27 | Azoospermia, Male infertility single gene azoospermia, Spermatogenic failure, x-linked, Testicular azoospermia |
| M1AP | 4 / 27 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| MEIOB | 4 / 27 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| PNLDC1 | 4 / 27 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| SHOC1 | 4 / 27 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| STAG3 | 4 / 27 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure, Testicular azoospermia |
| SYCE1 | 4 / 27 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure, SYCE1-related gametogenic failure |
| SYCP3 | 4 / 27 | Azoospermia, Male infertility, Male infertility single gene azoospermia, Spermatogenic failure |
| TDRD9 | 4 / 27 | Azoospermia, Male infertility, Male infertility single gene azoospermia, Spermatogenic failure |
| TERB1 | 4 / 27 | Azoospermia, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TEX11 | 4 / 27 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, x-linked, Testicular azoospermia |
| USP26 | 4 / 27 | Congenital impairment of spermatozoa motility, Male infertility, Spermatogenic failure, x-linked, Teratozoospermia |
| ZMYND15 | 4 / 27 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| BRDT | 3 / 27 | Azoospermia, Premature ovarian failure, Spermatogenic failure |
| CATSPER1 | 3 / 27 | Congenital impairment of spermatozoa motility, Male infertility, Spermatogenic failure |
| CCDC146 | 3 / 27 | Male infertility single gene azoospermia, Male infertility spermatogenesis disorder, Spermatogenic failure |
| CFAP251 | 3 / 27 | Congenital impairment of spermatozoa motility, Male infertility teratozoospermia, Spermatogenic failure |
| CFAP47 | 3 / 27 | Male infertility large polyploid spermatozoa, Spermatogenic failure, x-linked, spermatogenic failure, x-linked, 3 |
| CFTR | 3 / 27 | Azoospermia, Male infertility, Male infertility single gene azoospermia |
| DMC1 | 3 / 27 | Azoospermia, Spermatogenic failure, Testicular azoospermia |
| DNAH6 | 3 / 27 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| DNAH8 | 3 / 27 | Male infertility large polyploid spermatozoa, Spermatogenic failure, spermatogenic failure 46 |
| FAHD1 | 3 / 27 | Azoospermia, Premature ovarian failure, Spermatogenic failure |
| KASH5 | 3 / 27 | Azoospermia, Premature ovarian failure, Spermatogenic failure |
| KLHL10 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| MCM9 | 3 / 27 | Male infertility, Premature ovarian failure, Testicular azoospermia |
| MSH4 | 3 / 27 | Premature ovarian failure, Spermatogenic failure, Testicular azoospermia |
| NOS3 | 3 / 27 | Male infertility, Premature ovarian failure, Teratozoospermia |
| PDHA2 | 3 / 27 | Azoospermia, Male infertility single gene azoospermia, Spermatogenic failure |
| REC8 | 3 / 27 | Azoospermia, Premature ovarian failure, Testicular azoospermia |
| RNF212 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| SPAG17 | 3 / 27 | Congenital impairment of spermatozoa motility, Male infertility single gene azoospermia, Spermatogenic failure |
| SPEF2 | 3 / 27 | Congenital impairment of spermatozoa motility, primary ciliary dyskinesia, Spermatogenic failure |
| SSX1 | 3 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure, x-linked, Synovial sarcoma |
| SYCP2 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TERB2 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TEX14 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TEX15 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TTC21A | 3 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure, Teratozoospermia |
| TTC29 | 3 / 27 | Congenital impairment of spermatozoa motility, Male infertility spermatogenesis disorder, Spermatogenic failure |
| XRCC2 | 3 / 27 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| ZSWIM7 | 3 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| ACTL7A | 2 / 27 | Male infertility, Spermatogenic failure |
| ACTL9 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| ADCY10 | 2 / 27 | Male infertility, Teratozoospermia |
| AFP | 2 / 27 | Congenital alpha-fetoprotein deficiency, Premature ovarian failure |
| AK7 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| AKAP3 | 2 / 27 | Male infertility large polyploid spermatozoa, Spermatogenic failure |
| AKAP4 | 2 / 27 | Congenital impairment of spermatozoa motility, Teratozoospermia |
| ARMC12 | 2 / 27 | Male infertility large polyploid spermatozoa, Spermatogenic failure |
| AXDND1 | 2 / 27 | Male infertility, Testicular azoospermia |
| BCL2 | 2 / 27 | Azoospermia, Male infertility |
| BNC1 | 2 / 27 | Male infertility single gene azoospermia, Premature ovarian failure |
| BRWD1 | 2 / 27 | Male infertility, Premature ovarian failure |
| CATIP | 2 / 27 | Male infertility single gene azoospermia, Spermatogenic failure |
| CATSPER2 | 2 / 27 | Male infertility, Spermatogenic failure |
| CCDC34 | 2 / 27 | Male infertility single gene azoospermia, Spermatogenic failure |
| CFAP221 | 2 / 27 | primary ciliary dyskinesia, Young syndrome |
| CFAP44 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP57 | 2 / 27 | primary ciliary dyskinesia, Spermatogenic failure |
| CFAP61 | 2 / 27 | Male infertility large polyploid spermatozoa, Spermatogenic failure |
| CFAP65 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP69 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP70 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP91 | 2 / 27 | Male infertility teratozoospermia, Spermatogenic failure |
| CT55 | 2 / 27 | Male infertility single gene azoospermia, Spermatogenic failure, x-linked |
| CUL4B | 2 / 27 | Teratozoospermia, X-linked intellectual disability, Cabezas type |
| CYP17A1 | 2 / 27 | Male infertility, Premature ovarian failure |
| DCAF6 | 2 / 27 | Male infertility, Teratozoospermia |
| DDX25 | 2 / 27 | Azoospermia, Male infertility single gene azoospermia |
| DHX37 | 2 / 27 | Male infertility single gene azoospermia, Male infertility spermatogenesis disorder |
| DNAH3 | 2 / 27 | Male infertility, Spermatogenic failure |
| DNAH7 | 2 / 27 | Male infertility single gene azoospermia, primary ciliary dyskinesia |
| DRC1 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| FBXO43 | 2 / 27 | Male infertility single gene azoospermia, Spermatogenic failure |
| FKBP6 | 2 / 27 | Male infertility, Spermatogenic failure |
| FSIP2 | 2 / 27 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| HENMT1 | 2 / 27 | Azoospermia, Male infertility |
| HFM1 | 2 / 27 | Azoospermia, Premature ovarian failure |
| HORMAD1 | 2 / 27 | Male infertility, Male infertility single gene azoospermia |
| IFT74 | 2 / 27 | Male infertility large polyploid spermatozoa, Spermatogenic failure |
| KMT2D | 2 / 27 | Male infertility, Male infertility spermatogenesis disorder |
| MCM8 | 2 / 27 | Azoospermia, Premature ovarian failure |
| MCMDC2 | 2 / 27 | Azoospermia, Male infertility single gene azoospermia |
| NANOS1 | 2 / 27 | Male infertility single gene azoospermia, Spermatogenic failure |
| NCKAP5 | 2 / 27 | Male infertility, Premature ovarian failure |
| PIWIL2 | 2 / 27 | Male infertility, Male infertility single gene azoospermia |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Ovarian steroidogenesis | KEGG | 9 / 52 | 5.1× | 5.87e-5 | 1.46e-3 ✓ sig. |
| Prolactin signaling pathway | KEGG | 10 / 71 | 4.1× | 1.41e-4 | 2.96e-3 ✓ sig. |
| Sperm Motility And Taxes | Reactome | 4 / 9 | 13.0× | 1.49e-4 | 3.09e-3 ✓ sig. |
| Hormone ligand-binding receptors | Reactome | 4 / 12 | 9.7× | 5.38e-4 | 8.43e-3 ✓ sig. |
| Defective MTRR causes methylmalonic aciduria and homocystinuria type cblE | Reactome | 2 / 2 | 29.2× | 1.17e-3 | 1.52e-2 ✓ sig. |
| Defective MTR causes methylmalonic aciduria and homocystinuria type cblG | Reactome | 2 / 2 | 29.2× | 1.17e-3 | 1.52e-2 ✓ sig. |
| Chronic myeloid leukemia | KEGG | 9 / 77 | 3.4× | 1.21e-3 | 1.57e-2 ✓ sig. |
| SUMOylation of intracellular receptors | Reactome | 5 / 27 | 5.4× | 1.98e-3 | 2.27e-2 ✓ sig. |
| Motor proteins | KEGG | 15 / 194 | 2.3× | 2.75e-3 | 2.89e-2 ✓ sig. |
| GLI proteins bind promoters of Hh responsive genes to promote transcription | Reactome | 2 / 3 | 19.5× | 3.43e-3 | 3.38e-2 ✓ sig. |
| MAPK3 (ERK1) activation | Reactome | 3 / 10 | 8.8× | 3.99e-3 | 3.77e-2 ✓ sig. |
| Autophagy - other | KEGG | 5 / 32 | 4.6× | 4.30e-3 | 3.97e-2 ✓ sig. |
| Huntington disease | KEGG | 20 / 308 | 1.9× | 4.64e-3 | 4.17e-2 ✓ sig. |
| Stabilization of p53 | Reactome | 3 / 11 | 8.0× | 5.35e-3 | 4.57e-2 ✓ sig. |
| Interleukin-6 signaling | Reactome | 3 / 11 | 8.0× | 5.35e-3 | 4.57e-2 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| spermatogenesis | GO:0007283 | 102 / 556 | 8.3× | 3.07e-65 | 1.79e-60 ✓ sig. |
| meiotic cell cycle | GO:0051321 | 45 / 137 | 14.9× | 1.24e-40 | 1.35e-36 ✓ sig. |
| cell differentiation | GO:0030154 | 88 / 1,051 | 3.8× | 2.64e-28 | 1.27e-24 ✓ sig. |
| piRNA processing | GO:0034587 | 17 / 21 | 36.8× | 2.62e-25 | 8.49e-22 ✓ sig. |
| flagellated sperm motility | GO:0030317 | 32 / 142 | 10.2× | 1.93e-23 | 5.14e-20 ✓ sig. |
| spermatid development | GO:0007286 | 28 / 120 | 10.6× | 4.27e-21 | 8.07e-18 ✓ sig. |
| male meiotic nuclear division | GO:0007140 | 15 / 31 | 22.0× | 2.31e-17 | 2.54e-14 ✓ sig. |
| fertilization | GO:0009566 | 18 / 54 | 15.2× | 4.70e-17 | 4.83e-14 ✓ sig. |
| homologous chromosome pairing at meiosis | GO:0007129 | 15 / 33 | 20.7× | 7.65e-17 | 7.52e-14 ✓ sig. |
| regulatory ncRNA-mediated gene silencing | GO:0031047 | 19 / 65 | 13.3× | 1.03e-16 | 9.83e-14 ✓ sig. |
| cilium movement | GO:0003341 | 17 / 48 | 16.1× | 1.08e-16 | 1.02e-13 ✓ sig. |
| oogenesis | GO:0048477 | 17 / 53 | 14.6× | 7.43e-16 | 5.95e-13 ✓ sig. |
| cilium movement involved in cell motility | GO:0060294 | 13 / 27 | 21.9× | 3.54e-15 | 2.54e-12 ✓ sig. |
| sperm axoneme assembly | GO:0007288 | 13 / 31 | 19.1× | 3.36e-14 | 2.00e-11 ✓ sig. |
| synaptonemal complex assembly | GO:0007130 | 12 / 25 | 21.8× | 4.39e-14 | 2.57e-11 ✓ sig. |