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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital myopathy Myopathy
12 genes
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10 of 12 corroborated by 2+ sources
SCN4A(4), ACTA1(7), MEGF10(3), RYR1(6), MYH7(5), TTN(3), DYSF(3), TPM3(4), ITGA7(1), FKRP(1), MYH2(2), COL6A6(2)
0.082 0.267 2.82e-16 4.39e-15 ✓ sig. —
Maturity-onset diabetes of the young Permanent neonatal diabetes mellitus
6 genes
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6 of 6 corroborated by 2+ sources
INS(5), ABCC8(5), KCNJ11(5), GCK(6), PDX1(4), NEUROD1(3)
0.273 0.462 2.78e-16 4.32e-15 ✓ sig. Cluster 36 →
46,xy gonadal dysgenesis Ovarian dysgenesis
6 genes
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6 of 6 corroborated by 2+ sources
BMP15(5), FSHR(5), MRPS22(4), NUP107(4), PSMC3IP(5), SPIDR(5)
0.273 0.500 2.49e-16 3.88e-15 ✓ sig. Cluster 38 →
Congenital pes cavus Dejerine-sottas disease
7 genes
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1 of 7 corroborated by 2+ sources
DYNC1H1(1), NEFL(1), SH3TC2(1), GARS1(1), MPZ(3), GDAP1(1), GJB1(1)
0.159 0.583 2.44e-16 3.80e-15 ✓ sig. Cluster 15 →
Congenital pes cavus Hypertrophic neuropathy
7 genes
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1 of 7 corroborated by 2+ sources
DYNC1H1(1), NEFL(1), SH3TC2(1), GARS1(1), MPZ(2), GDAP1(1), GJB1(1)
0.159 0.583 2.44e-16 3.80e-15 ✓ sig. Cluster 15 →
Congenital pes cavus Roussy-levy syndrome
7 genes
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1 of 7 corroborated by 2+ sources
DYNC1H1(1), NEFL(1), SH3TC2(1), GARS1(1), MPZ(4), GDAP1(1), GJB1(1)
0.159 0.583 2.44e-16 3.80e-15 ✓ sig. Cluster 15 →
Migraine Stroke
40 genes
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11 of 40 corroborated by 2+ sources
CASZ1(2), PRDM16(3), RUNX1(1), AGBL1(1), BAZ1B(1), CDC5L(1), DENND1A(1), MLXIPL(1), PRKG1(1), SUPT3H(1), TCF7L2(1), WDR12(1) +28 more
0.058 0.124 2.39e-16 3.74e-15 ✓ sig. —
Congestive heart failure Pulmonary hypertension
15 genes
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14 of 15 corroborated by 2+ sources
EDNRB(2), ACE(2), NOS3(2), SOD2(2), TNF(2), SLC6A4(2), HIF1A(2), NPPB(2), CCL2(2), RYR1(1), ACE2(2), EDN1(2) +3 more
0.066 0.246 2.34e-16 3.66e-15 ✓ sig. —
Brain ischemia Sepsis
10 genes
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10 of 10 corroborated by 2+ sources
CASP3(2), IL1B(2), TNF(2), IL6(2), MAPK1(2), CSF3(2), MMP9(2), ANGPT1(2), MAPK3(2), NOS2(2)
0.105 0.294 2.32e-16 3.63e-15 ✓ sig. Cluster 114 →
Genetic steroid-resistant nephrotic syndrome Steroid-resistant nephrotic syndrome
7 genes
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WT1(1), COL4A3(1), PAX2(1), CRB2(1), NPHS2(1), AVIL(1), NPHS1(1)
0.171 0.538 2.25e-16 3.52e-15 ✓ sig. —
Dementia Oligodendroglioma
66 genes
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ANK3(1), BIN1(1), CAMK1D(1), CCDC190(1), CHN2(1), CHRM3(1), CNTNAP2(1), CPNE4(1), DGKB(1), EGFLAM(1), FAM135B(1), FAR2(1) +54 more
0.061 0.118 2.22e-16 3.48e-15 ✓ sig. Cluster 2 →
Brugada syndrome Hereditary atrial fibrillation
9 genes
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9 of 9 corroborated by 2+ sources
GATA4(2), ABCC9(4), KCNJ2(2), KCNQ1(2), SCN5A(8), TTN(2), SCN1B(6), SCN2B(4), SCN3B(7)
0.114 0.375 2.21e-16 3.46e-15 ✓ sig. Cluster 4 →
Situs ambiguus Situs inversus
7 genes
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3 of 7 corroborated by 2+ sources
PKD1L1(1), DNAH5(1), CIROP(1), DNAH9(2), MMP21(2), CFAP53(1), NODAL(2)
0.200 0.350 2.19e-16 3.44e-15 ✓ sig. Cluster 46 →
Congenital heart disease Conotruncal cardiac defect
15 genes
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5 of 15 corroborated by 2+ sources
TBX1(5), CDH13(1), FOXP2(1), NKX2-6(7), CARTPT(1), MAP1B(1), AHR(1), NKX2-5(5), IQCJ(1), IQCJ-SCHIP1(1), SCHIP1(1), ADAM29(1) +3 more
0.068 0.238 2.17e-16 3.42e-15 ✓ sig. Cluster 111 →
Cervical disc degenerative disorder Intervertebral disc disease
5 genes
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5 of 5 corroborated by 2+ sources
IL1B(2), TNF(2), TGFB1(2), ASPN(3), SPARC(2)
0.417 0.833 2.10e-16 3.30e-15 ✓ sig. Cluster 180 →
Cleft lip and palate Cleft palate
8 genes
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6 of 8 corroborated by 2+ sources
TP63(2), IRF6(2), MSX1(2), PDGFRA(2), CDH1(2), DLG1(2), ARHGAP29(1), NECTIN1(1)
0.118 0.533 2.06e-16 3.24e-15 ✓ sig. Cluster 63 →
Diverticular disease Hemorrhoid
19 genes
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4 of 19 corroborated by 2+ sources
NF1(1), BMPR1B(2), TP53(2), ANO1(1), TBX5(1), BTC(1), ELN(2), MAP2K4(1), SMAD3(1), TMEM270(1), ABO(2), GDF7(1) +7 more
0.059 0.213 1.92e-16 3.03e-15 ✓ sig. —
Nasal disorder Rhinitis
9 genes
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1 of 9 corroborated by 2+ sources
EMSY(1), NEK6(1), SMAD3(1), CLEC16A(1), IL7R(1), IL1RL1(1), IL4R(2), RANBP6(1), WDR36(1)
0.113 0.391 1.86e-16 2.94e-15 ✓ sig. —
Costello syndrome noonan syndrome with multiple lentigines
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(3), NRAS(3), RAF1(2), PTPN11(3), MAP2K1(3)
0.357 1.000 1.79e-16 2.82e-15 ✓ sig. Cluster 42 →
Kleins syndrome Waardenburg syndrome
5 genes
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5 of 5 corroborated by 2+ sources
EDNRB(7), PAX3(6), KITLG(5), MITF(7), EDN3(7)
0.357 1.000 1.79e-16 2.82e-15 ✓ sig. Cluster 229 →
Cervical cancer Upper aerodigestive tract neoplasm
23 genes
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TP53(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), NYAP2(1), RBFOX1(1), TNXB(1), HLA-DQB1(1), MUC22(1), ZSCAN31(1), FBLN2(1), HLA-DMB(1) +11 more
0.063 0.143 1.75e-16 2.76e-15 ✓ sig. —
Intellectual developmental disorder, x-linked non-syndromic X-linked intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
GDI1(5), HUWE1(6), ACSL4(5), DLG3(6), SYP(6), AFF2(3), TSPAN7(6)
0.078 1.000 1.69e-16 2.68e-15 ✓ sig. —
Cortical dysplasia with other brain malformations Lissencephaly
8 genes
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8 of 8 corroborated by 2+ sources
TUBG1(4), CTNNA2(5), DYNC1H1(3), TUBB(3), TUBB3(3), APC2(5), TUBB2B(3), TUBGCP2(2)
0.133 0.471 1.63e-16 2.58e-15 ✓ sig. —
hereditary pheochromocytoma-paraganglioma Paraganglioma
5 genes
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5 of 5 corroborated by 2+ sources
SDHB(4), SDHD(4), SDHA(2), SDHC(4), SDHAF2(3)
0.455 0.714 1.63e-16 2.58e-15 ✓ sig. Cluster 81 →
hereditary pheochromocytoma-paraganglioma Pheochromocytoma/paraganglioma syndrome
5 genes
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5 of 5 corroborated by 2+ sources
SDHB(5), SDHD(4), SDHA(5), SDHC(4), SDHAF2(4)
0.455 0.714 1.63e-16 2.58e-15 ✓ sig. Cluster 81 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.