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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bone fragility with contractures, arterial rupture, and deafness Osteoporosis
11 genes
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11 of 11 corroborated by 2+ sources
GORAB(2), SERPINF1(2), COL1A1(3), COL1A2(3), WNT1(5), LRP5(4), COPB2(5), IFITM5(2), P4HB(2), PLS3(2), SP7(2)
0.059 0.224 8.14e-13 9.89e-12 ✓ sig. Cluster 68 →
Osteoporosis Osteoporosis-pseudoglioma syndrome
11 genes
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11 of 11 corroborated by 2+ sources
GORAB(2), SERPINF1(2), COL1A1(3), COL1A2(3), WNT1(5), LRP5(6), COPB2(5), IFITM5(2), P4HB(2), PLS3(2), SP7(2)
0.059 0.224 8.14e-13 9.89e-12 ✓ sig. Cluster 68 →
Bartter syndrome Gitelman syndrome
4 genes
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3 of 4 corroborated by 2+ sources
CLCNKB(6), SLC12A1(7), CASR(1), SLC12A3(5)
0.333 0.667 8.07e-13 9.81e-12 ✓ sig. —
Ichthyosis Xeroderma
4 genes
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GJB2(1), PNPLA1(1), KRT2(1), SUPV3L1(1)
0.235 1.000 7.77e-13 9.46e-12 ✓ sig. —
Gonadal dysgenesis Xx gonadal dysgenesis syndrome
5 genes
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1 of 5 corroborated by 2+ sources
LARS2(1), TWNK(1), HSD17B4(2), ERAL1(1), HARS2(1)
0.156 0.625 7.61e-13 9.26e-12 ✓ sig. —
Lymphatic malformation Non-immune hydrops fetalis
6 genes
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6 of 6 corroborated by 2+ sources
EPHB4(4), PIEZO1(5), THSD1(4), ANGPT2(4), CALCRL(4), FLT4(5)
0.113 0.462 7.44e-13 9.07e-12 ✓ sig. —
Deficiency anemia Vitamin deficiency disorder
5 genes
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FUT2(1), TCN2(1), CUBN(1), TCN1(1), OOSP3(1)
0.172 0.556 7.40e-13 9.02e-12 ✓ sig. Cluster 106 →
Fatty liver, alcoholic Hepatomegaly
10 genes
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10 of 10 corroborated by 2+ sources
LDLR(2), LEP(2), NFE2L2(2), PPARA(2), AKT1(2), CYP1B1(2), MET(2), NR1H4(2), NR1I2(2), LEPR(2)
0.074 0.172 7.23e-13 8.82e-12 ✓ sig. —
Ductal carcinoma Intraductal noninfiltrating carcinoma
4 genes
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CA9(1), HIF1A(1), STAT5A(1), SLC2A1(1)
0.308 0.800 7.04e-13 8.60e-12 ✓ sig. Cluster 124 →
Androgenetic alopecia Prostate cancer
66 genes
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12 of 66 corroborated by 2+ sources
KANSL1(1), RREB1(1), SRD5A2(2), CCDC91(1), CDKAL1(1), EBF1(1), FMN1(1), GLI2(1), ILRUN(1), L3MBTL3(1), LINC02210-CRHR1(1), NSF(1) +54 more
0.051 0.162 6.88e-13 8.40e-12 ✓ sig. Cluster 20 →
Atopic dermatitis Contact dermatitis
10 genes
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10 of 10 corroborated by 2+ sources
GSTP1(2), TLR4(2), AHR(3), CYP1A1(2), CXCR3(2), IL18(2), FLG(4), GLB1(2), CLDN1(2), S100A8(2)
0.076 0.152 6.85e-13 8.37e-12 ✓ sig. Cluster 16 →
Myasthenic syndrome Pena-shokeir syndrome
8 genes
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7 of 8 corroborated by 2+ sources
SCN4A(3), RAPSN(3), RYR1(1), CHRNG(2), CHRND(3), MUSK(3), SLC18A3(3), DOK7(2)
0.094 0.200 6.82e-13 8.34e-12 ✓ sig. —
Amnesia Hypotension
7 genes
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7 of 7 corroborated by 2+ sources
IL1A(2), IL2(2), AVP(2), IL6(2), PDYN(2), POMC(2), TAC1(2)
0.089 0.389 6.55e-13 8.02e-12 ✓ sig. Cluster 13 →
Cleft lip Cleft lip and palate
6 genes
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2 of 6 corroborated by 2+ sources
TP63(2), IRF6(2), BMP4(1), MSX1(1), CDH1(1), NECTIN1(1)
0.128 0.400 6.19e-13 7.58e-12 ✓ sig. Cluster 63 →
Brain ischemia Status epilepticus
10 genes
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10 of 10 corroborated by 2+ sources
CAT(2), BDNF(2), CASP3(2), TNF(2), PTGS2(2), CCL2(2), NOS2(2), IL1RN(2), JUN(2), CCL3(2)
0.076 0.143 6.18e-13 7.57e-12 ✓ sig. Cluster 114 →
Colorectal neoplasms Endometrial neoplasms
20 genes
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4 of 20 corroborated by 2+ sources
ARID1A(1), ESR2(1), MSH6(1), SULT2B1(1), TET2(2), MTHFR(1), PPARG(2), AKT1(2), RNF43(1), CXCL8(1), GUCY1A2(2), TNFSF10(1) +8 more
0.050 0.152 6.12e-13 7.50e-12 ✓ sig. —
Ventricular dysfunction Ventricular remodeling
7 genes
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AGT(1), NFE2L2(1), AKT1(1), CTNNB1(1), NPPB(1), MYH6(1), SIRT6(1)
0.108 0.280 6.08e-13 7.46e-12 ✓ sig. —
Congenital ear anomaly Meniere disease
8 genes
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PCDH15(1), ADGRV1(1), MYO6(1), CDH23(1), MYO7A(1), TBCEL-TECTA(1), TECTA(1), C10orf105(1)
0.088 0.258 6.08e-13 7.46e-12 ✓ sig. Cluster 26 →
Aortic valve disease Thoracic aortic aneurysm and aortic dissection
9 genes
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7 of 9 corroborated by 2+ sources
FBN1(5), NOTCH1(4), COL5A1(1), TGFB2(5), COL1A1(2), COL3A1(2), LOX(6), ROBO4(5), GATA5(1)
0.079 0.220 5.97e-13 7.33e-12 ✓ sig. —
Aniridia Anterior segment dysgenesis
5 genes
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5 of 5 corroborated by 2+ sources
ELP4(5), FOXC1(5), FOXD3(2), PAX6(4), PITX2(5)
0.179 0.556 5.86e-13 7.20e-12 ✓ sig. —
Maturity-onset diabetes of the young (mody) Transient neonatal diabetes mellitus
5 genes
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5 of 5 corroborated by 2+ sources
HNF1B(2), INS(5), ABCC8(6), KCNJ11(7), GCK(6)
0.179 0.556 5.86e-13 7.20e-12 ✓ sig. Cluster 36 →
Ectodermal dysplasia Hypohidrotic ectodermal dysplasia
5 genes
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5 of 5 corroborated by 2+ sources
EDAR(6), WNT10A(4), EDARADD(7), KDF1(7), CSTB(3)
0.143 0.714 5.85e-13 7.20e-12 ✓ sig. Cluster 117 →
Cleft eyelid Coloboma
4 genes
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2 of 4 corroborated by 2+ sources
PAX6(4), FZD5(1), ABCB6(1), SALL2(2)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. Cluster 272 →
Cleft lip and cleft of alveolar process of maxilla Cleft lip and palate
4 genes
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TP63(1), IRF6(1), MSX1(1), NECTIN1(1)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. —
Congenital malformation syndromes predominantly affecting facial appearance Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.250 1.000 5.83e-13 7.18e-12 ✓ sig. Cluster 48 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.