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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Glomerulonephritis Hypersensitivity
14 genes
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14 of 14 corroborated by 2+ sources
HLA-DQA1(2), IL10(2), IL1B(2), MTHFR(2), TNF(2), IL6(2), ALB(2), IFNG(2), CCL2(2), CXCR3(2), IL18(2), CCL3(2) +2 more
0.091 0.200 8.48e-18 1.44e-16 ✓ sig. Cluster 16 →
Bipolar depression Psychotic disorders
17 genes
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9 of 17 corroborated by 2+ sources
ANK3(1), GCH1(1), BDNF(2), MAOA(1), NTRK1(2), CACNA1C(1), TENM4(1), TRPM2(1), NR3C1(2), TPH2(1), GRIK4(1), HTR2A(2) +5 more
0.079 0.162 8.50e-18 1.44e-16 ✓ sig. —
Ciliary dyskinesia Polynesian bronchiectasis
8 genes
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8 of 8 corroborated by 2+ sources
DNAH5(7), CCDC40(6), DNAH11(7), DNAI1(5), DNAAF3(6), DNAAF19(7), DNAAF4(7), DRC1(6)
0.087 0.889 8.87e-18 1.50e-16 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia
8 genes
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8 of 8 corroborated by 2+ sources
SPEF2(4), DNAH10(3), CFAP221(4), CFAP43(2), DNAH7(5), CFAP57(3), DNAH1(6), DAW1(6)
0.087 0.889 8.87e-18 1.50e-16 ✓ sig. —
Deep vein thrombosis Thrombophilia
7 genes
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6 of 7 corroborated by 2+ sources
FGA(3), PLAT(3), PLG(1), PROC(5), PROS1(5), FGB(2), SERPIND1(2)
0.194 0.700 9.89e-18 1.67e-16 ✓ sig. —
Lymphatic metastasis Non-small-cell lung carcinoma
12 genes
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GRIK2(1), MACIR(1), SOD2(1), STAT3(1), TRMT11(1), MET(1), CDKN2A(1), CCNH(1), MTOR(1), TP53BP1(1), LRRC59(1), SLC22A10(1)
0.077 0.400 1.14e-17 1.92e-16 ✓ sig. Cluster 5 →
Epiphyseal dysplasia Osteochondrodysplasias
7 genes
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7 of 7 corroborated by 2+ sources
SLC26A2(3), COL2A1(3), COMP(3), COL9A1(5), COL9A2(5), COL9A3(5), MATN3(3)
0.189 0.700 1.26e-17 2.12e-16 ✓ sig. —
Diabetes mellitus type 1 Iga nephropathy
36 genes
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12 of 36 corroborated by 2+ sources
NOTCH2(2), ACE(1), AFF3(1), ANKRD55(1), ASAP1(1), ETS1(2), HLA-DQA1(3), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(3), IKZF1(1), INPP5B(1) +24 more
0.056 0.177 1.29e-17 2.18e-16 ✓ sig. Cluster 28 →
Atrial septal defect Congenital heart septal defect
8 genes
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5 of 8 corroborated by 2+ sources
GATA4(6), ROBO1(1), MYH6(6), NKX2-5(6), HSPBAP1(1), PARP14(1), CITED2(6), PQBP1(2)
0.174 0.444 1.30e-17 2.19e-16 ✓ sig. Cluster 364 →
Complete unilateral cleft lip Orofacial cleft
13 genes
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9 of 13 corroborated by 2+ sources
ABCA4(2), TP63(4), FGF10(1), IRF6(4), MTHFR(1), BMP4(5), NOG(2), MSX1(4), FGFR1(1), CDH1(2), MAFB(2), SUMO1(5) +1 more
0.072 0.361 1.35e-17 2.27e-16 ✓ sig. Cluster 63 →
Interstitial lung disease Pulmonary fibrosis
14 genes
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8 of 14 corroborated by 2+ sources
RTEL1(1), TERT(4), ARL17B(1), DSP(3), MUC5B(4), IL1RN(2), MUC5AC(1), SFTPC(4), SPDL1(1), FAM13A(3), LRRC34(1), SFTPA1(5) +2 more
0.088 0.212 1.46e-17 2.46e-16 ✓ sig. —
Hereditary spastic paraplegia Spastic ataxia
14 genes
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4 of 14 corroborated by 2+ sources
SETX(1), SPG11(1), PNPLA6(2), CYP7B1(2), KIF1C(4), SACS(3), SPG7(1), SPAST(1), KIF1A(1), AMPD2(1), FA2H(1), C19orf12(1) +2 more
0.089 0.200 1.53e-17 2.58e-16 ✓ sig. —
Biliary cirrhosis Sjogren syndrome
15 genes
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7 of 15 corroborated by 2+ sources
DGKQ(3), HLA-DQA1(2), HLA-DRA(1), ATXN2(1), HLA-DQB1(2), ATG5(1), HLA-DPB1(1), CTLA4(2), IRF5(1), STAT4(3), TNPO3(1), CXCR5(2) +3 more
0.081 0.211 1.67e-17 2.80e-16 ✓ sig. —
Restrictive cardiomyopathy Wolff-parkinson-white syndrome
9 genes
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2 of 9 corroborated by 2+ sources
PRDM16(1), DSP(1), CACNA1C(1), MYH6(1), FLNC(3), MYH7(1), TTN(1), ACTC1(1), TNNT2(3)
0.136 0.391 1.80e-17 3.02e-16 ✓ sig. Cluster 4 →
Carcinoma Pancreatic neoplasms
19 genes
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2 of 19 corroborated by 2+ sources
PTEN(1), TP53(1), TP63(2), BCL2L1(1), EGFR(1), EPCAM(1), SOD2(1), STAT3(1), EFEMP1(1), PTGS2(1), HIF1A(1), TGFB1(1) +7 more
0.072 0.162 1.82e-17 3.06e-16 ✓ sig. Cluster 5 →
Peripheral arterial disease Peripheral vascular disease
13 genes
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1 of 13 corroborated by 2+ sources
HDAC9(1), NFAT5(1), TCF7L2(1), ATXN2(1), CHRNA3(1), TWIST1(1), ABO(1), CELSR2(1), DAB2IP(2), LPA(1), F5(1), EDNRA(1) +1 more
0.066 0.394 1.84e-17 3.08e-16 ✓ sig. Cluster 307 →
Migraine Myocardial infarction
56 genes
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17 of 56 corroborated by 2+ sources
PRDM16(3), SKI(1), RUNX1(1), SERPINA1(1), C1GALT1(1), CDH13(1), FBN2(1), HEYL(1), ICA1L(1), INPP5B(1), JCAD(1), KCNE2(1) +44 more
0.060 0.139 1.86e-17 3.11e-16 ✓ sig. Cluster 78 →
Substance abuse Willis-ekbom disease
36 genes
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4 of 36 corroborated by 2+ sources
ALCAM(1), CAMTA1(1), CCKBR(2), CNTNAP5(1), CRBN(1), CTNNA3(1), DAB1(1), GRIA1(2), IGSF11(1), KDM4B(1), LINGO2(1), LSAMP(1) +24 more
0.054 0.188 2.06e-17 3.44e-16 ✓ sig. Cluster 2 →
Cleft lip Orofacial cleft
13 genes
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12 of 13 corroborated by 2+ sources
ABCA4(3), TP63(5), FGF10(2), IRF6(4), MTHFR(2), BMP4(5), NOG(2), MSX1(4), FGFR1(2), CDH1(2), MAFB(3), SUMO1(5) +1 more
0.072 0.351 2.06e-17 3.45e-16 ✓ sig. Cluster 63 →
Dry eye syndrome Sjogren syndrome
12 genes
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TWIST2(1), DCHS2(1), NAV2(1), NMT1(1), THSD7A(1), PPP2R2B(1), IL6(1), KCNB2(1), CCNG1(1), SDC2(1), C1QL1(1), FAM241B(1)
0.103 0.211 2.09e-17 3.49e-16 ✓ sig. Cluster 25 →
Graves disease Psoriatic arthritis
14 genes
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12 of 14 corroborated by 2+ sources
IFIH1(3), HLA-DQA1(2), TNF(2), HLA-DQB1(2), CYP1A1(1), HLA-B(2), IL17A(2), IL23R(2), MUC22(1), PTPN22(3), STAT4(2), FBXL19(3) +2 more
0.088 0.192 2.16e-17 3.60e-16 ✓ sig. —
Cor pulmonale Thromboembolic pulmonary hypertension
6 genes
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FGA(1), ABO(1), SLC44A2(1), FGG(1), F11(1), TSPAN15(1)
0.316 0.667 2.27e-17 3.79e-16 ✓ sig. Cluster 149 →
Gonadal dysgenesis Ovarian dysgenesis
7 genes
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7 of 7 corroborated by 2+ sources
BMP15(5), FSHR(4), MRPS22(4), NUP107(4), PSMC3IP(4), SPIDR(4), ZSWIM7(4)
0.206 0.583 2.29e-17 3.82e-16 ✓ sig. Cluster 38 →
Combined oxidative phosphorylation deficiency Leigh syndrome
14 genes
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14 of 14 corroborated by 2+ sources
MTRFR(7), NARS2(6), PNPT1(7), EARS2(4), FARS2(7), AIFM1(5), TSFM(4), MTFMT(6), TARS2(6), GTPBP3(7), GFM2(6), GFM1(5) +2 more
0.086 0.206 2.30e-17 3.83e-16 ✓ sig. Cluster 50 →
Cardiofaciocutaneous syndrome Leopard syndrome
6 genes
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6 of 6 corroborated by 2+ sources
BRAF(8), NRAS(2), RAF1(5), PTPN11(6), MAP2K1(7), MAP2K2(8)
0.333 0.545 2.30e-17 3.83e-16 ✓ sig. Cluster 42 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.