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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Gout Metabolic syndrome
188 genes
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6 of 188 corroborated by 2+ sources
SKI(1), JMJD1C(1), RREB1(1), INS(3), GNAT2(1), ATP2A2(1), ABCA1(1), ABCA6(1), ADGRL2(1), ALDH1A2(1), APLNR(1), APOC1(1) +176 more
0.097 0.230 4.53e-39 1.84e-37 ✓ sig. Cluster 2 →
Anxiety disorder Mood disorder
43 genes
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23 of 43 corroborated by 2+ sources
SERPINA1(2), ARHGAP15(1), CELF4(1), DCC(1), DISC1(2), FOXP2(1), GRM8(3), HTR1A(1), HTR7(2), MAD1L1(1), MAPT(3), NTRK2(2) +31 more
0.107 0.295 3.40e-39 1.38e-37 ✓ sig. Cluster 2 →
Diabetic eye disease Diabetic neuropathy
28 genes
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3 of 28 corroborated by 2+ sources
CDKAL1(1), HMG20A(1), JAZF1(1), MACF1(1), MACIR(1), NRXN3(1), NYAP2(1), TCF7L2(1), TRPS1(1), PPARG(3), HLA-DQB1(1), TGFB1(3) +16 more
0.110 0.583 3.02e-39 1.23e-37 ✓ sig. Cluster 73 →
Maturity-onset diabetes of the young Maturity-onset diabetes of the young (mody)
13 genes
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13 of 13 corroborated by 2+ sources
INS(6), BLK(7), KLF11(6), ABCC8(4), HNF4A(6), PAX4(5), KCNJ11(7), GCK(7), HNF1A(6), PDX1(7), NEUROD1(6), CEL(8) +1 more
0.542 1.000 2.62e-39 1.07e-37 ✓ sig. Cluster 36 →
Autoimmune thyroid disease Vitiligo
33 genes
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9 of 33 corroborated by 2+ sources
RERE(1), SH2B3(3), IFIH1(3), BTNL2(1), FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), RHOH(1), MBL2(1), ATXN2(1), HLA-DQB1(1) +21 more
0.139 0.262 2.60e-39 1.06e-37 ✓ sig. Cluster 39 →
Psoriasis vulgaris Sclerosing cholangitis
29 genes
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IFIH1(1), CDKAL1(1), ETS1(1), TNIP1(1), UBE2L3(1), RUNX3(1), SLC9A8(1), IRF1(1), ERAP1(1), FAP(1), GRHL3(1), HLA-B(1) +17 more
0.113 0.537 2.25e-39 9.23e-38 ✓ sig. —
Hodgkin lymphoma Lymphocytic leukemia
30 genes
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DTNB(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), ULK4(1), BCL2(1), HLA-DQB1(1), EXOC2(1), IRF4(1), EOMES(1), PTPRK(1), SP140(1) +18 more
0.152 0.270 1.88e-39 7.73e-38 ✓ sig. Cluster 225 →
Hypercholesterolemia Hyperlipoproteinemia
19 genes
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17 of 19 corroborated by 2+ sources
ABCA1(2), APOB(6), APOE(5), EPHX2(3), GHR(3), LDLR(6), LIPC(2), APOA4(2), HMGCR(2), LPL(4), PON1(2), PON2(2) +7 more
0.279 0.475 1.78e-39 7.31e-38 ✓ sig. Cluster 141 →
Graves disease Hashimoto disease
20 genes
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9 of 20 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), IL6R(2), PRICKLE1(1), PRSS36(1), IL6(2), BACH2(1), CTLA4(4), IL2RA(1), PTPN22(3) +8 more
0.187 0.741 1.61e-39 6.65e-38 ✓ sig. Cluster 39 →
Hyperlipidemia Lipoprotein lipase deficiency
22 genes
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5 of 22 corroborated by 2+ sources
APOB(3), APOC1(1), APOE(3), FADS1(1), FADS2(1), LDLR(3), MLXIPL(1), NYAP2(1), PSD3(1), SMARCA4(1), VEGFA(1), LPL(7) +10 more
0.147 0.733 1.43e-39 5.91e-38 ✓ sig. Cluster 254 →
Prostatic neoplasms Urinary bladder neoplasms
55 genes
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USP7(1), CYP17A1(1), TERT(1), TP53(1), ARID1A(1), EGFR(1), ERCC2(1), ESR2(1), KMT2C(1), NECTIN2(1), MPO(1), ACHE(1) +43 more
0.077 0.387 1.29e-39 5.35e-38 ✓ sig. Cluster 5 →
Jeune syndrome Jeune thoracic dystrophy
18 genes
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12 of 18 corroborated by 2+ sources
NEK1(1), GRK2(2), IFT80(5), CEP120(3), DYNC2H1(5), DYNC2I1(3), DYNC2I2(3), DYNC2LI1(3), DYNLT2B(1), IFT140(2), IFT172(3), IFT52(1) +6 more
0.310 0.545 9.80e-40 4.06e-38 ✓ sig. Cluster 22 →
Breast neoplasms Ovarian neoplasms
50 genes
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PTEN(1), TERT(1), TP53(1), ATP7B(1), EGFR(1), GRIK2(1), MACIR(1), MECOM(1), NECTIN2(1), YAP1(1), SOD2(1), STAT3(1) +38 more
0.083 0.382 7.70e-40 3.20e-38 ✓ sig. Cluster 5 →
Neurotic disorder Post-traumatic stress disorder
56 genes
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SOX5(1), KANSL1(1), ARHGAP15(1), CACNA1E(1), CSMD1(1), CTTNBP2(1), DCC(1), FOXP2(1), GABBR1(1), GRM8(1), LINC02210-CRHR1(1), LINGO1(1) +44 more
0.096 0.276 6.95e-40 2.89e-38 ✓ sig. Cluster 2 →
Generalized epilepsy Partial epilepsy
21 genes
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1 of 21 corroborated by 2+ sources
CUX2(1), GABRA2(1), GRM3(1), OGA(1), PCDH7(1), RPH3A(1), TRIM36(1), ALDH2(1), VRK2(1), GBF1(1), SCN1A(3), TNKS(1) +9 more
0.236 0.477 6.88e-40 2.87e-38 ✓ sig. —
Lung neoplasms Prostatic neoplasms
71 genes
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HNF1B(1), PTEN(1), CHEK2(1), TERT(1), TP53(1), ACE(1), BRAF(1), CDH13(1), EGFR(1), ERBB3(1), ROBO1(1), MPO(1) +59 more
0.088 0.280 5.91e-40 2.47e-38 ✓ sig. Cluster 5 →
Congenital neutropenia Severe congenital neutropenia
14 genes
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14 of 14 corroborated by 2+ sources
CLPB(5), CSF3R(6), VPS45(6), GFI1(6), ELANE(6), SRP19(2), SRP54(5), TCIRG1(3), SEC61A1(3), G6PC3(7), JAGN1(6), HAX1(3) +2 more
0.538 0.824 4.52e-40 1.89e-38 ✓ sig. Cluster 209 →
Bardet-biedl syndrome Ciliopathy
23 genes
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23 of 23 corroborated by 2+ sources
WDPCP(8), RPGRIP1L(3), TMEM67(4), IFT172(6), WDR19(2), SCLT1(3), BBS7(5), SDCCAG8(7), IFT74(7), ARL6(7), BBS2(7), CFAP418(7) +11 more
0.213 0.390 4.40e-40 1.85e-38 ✓ sig. Cluster 8 →
Diabetes mellitus type 2 Gout
324 genes
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55 of 324 corroborated by 2+ sources
SIN3A(1), SKI(1), JMJD1C(1), RREB1(1), INS(3), GNAT2(1), ATP2A2(3), NOTCH2(3), PIK3R1(3), TPCN2(1), SERPINF2(1), ABCA1(2) +312 more
0.091 0.396 3.56e-40 1.50e-38 ✓ sig. Cluster 2 →
Astrocytoma Glioblastoma
76 genes
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3 of 76 corroborated by 2+ sources
NF1(1), NOTCH2(1), NOTCH1(1), HMCN1(1), TEAD1(1), AGBL1(1), ARHGEF28(1), C6orf118(1), CTNNA3(1), DSCAM(1), FAM163A(1), G3BP1(2) +64 more
0.091 0.252 2.46e-40 1.04e-38 ✓ sig. Cluster 284 →
Kidney failure Myocardial ischemia
59 genes
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42 of 59 corroborated by 2+ sources
TP53(1), GATM(3), AHSG(1), SERPINA1(2), ABCA1(2), ACE(2), AGT(2), APOE(2), EPHX2(2), MLXIPL(2), MMP3(1), SCARB1(3) +47 more
0.101 0.235 2.17e-40 9.16e-39 ✓ sig. Cluster 139 →
Jeune syndrome Short rib dysplasia-polydactyly syndrome
17 genes
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16 of 17 corroborated by 2+ sources
NEK1(3), IFT80(5), CEP120(3), DYNC2H1(6), DYNC2I1(4), DYNC2I2(4), DYNC2LI1(4), DYNLT2B(2), IFT140(3), IFT172(3), IFT52(2), INTU(1) +5 more
0.340 0.708 2.03e-40 8.61e-39 ✓ sig. Cluster 22 →
Liver disease Nonalcoholic fatty liver disease
46 genes
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25 of 46 corroborated by 2+ sources
INS(2), MTTP(3), SERPINA1(3), APOC1(1), APOE(1), CYP1A2(2), HS3ST1(1), TRIB1(3), HFE(2), ALDH2(2), GSTP1(2), GSTT1(2) +34 more
0.107 0.293 1.37e-40 5.83e-39 ✓ sig. Cluster 226 →
Cancer Stroke
56 genes
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2 of 56 corroborated by 2+ sources
SH2B3(2), ANKRD26(1), ALDH1A2(1), ANKRD31(1), APOB(1), APOC1(1), BAZ1B(1), BCL3(1), CCDC91(1), FADS1(1), FADS2(1), LIPC(1) +44 more
0.106 0.215 1.07e-40 4.54e-39 ✓ sig. —
Congenital impairment of spermatozoa motility Spermatogenic failure
20 genes
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20 of 20 corroborated by 2+ sources
CATSPER1(5), SPAG17(4), SPEF2(4), ACTL9(4), ARMC2(5), CFAP43(5), TTC29(4), SLC26A8(4), DRC1(4), DNAH1(5), AK7(5), DNAH17(4) +8 more
0.169 0.870 7.34e-41 3.12e-39 ✓ sig. Cluster 31 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.