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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Colorectal neoplasms Stomach neoplasms
40 genes
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DPYD(1), BMP2(1), CHEK2(1), TP53(1), ARID1A(1), EGFR(1), ERCC2(1), FADS1(1), IGFBP3(1), MTHFR(1), PPARG(1), SOD2(1) +28 more
0.072 0.137 2.23e-22 4.69e-21 ✓ sig. Cluster 5 →
Colonic neoplasms Lung neoplasms
32 genes
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1 of 32 corroborated by 2+ sources
WT1(1), HNF1B(1), DPYD(1), TP53(1), EGFR(1), PRKN(1), A2M(1), IL1B(1), MTHFR(1), STAT3(1), TNF(1), CTNNB1(1) +20 more
0.075 0.158 2.14e-22 4.52e-21 ✓ sig. Cluster 5 →
Thrombophilia Venous thrombosis
10 genes
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10 of 10 corroborated by 2+ sources
F13A1(3), F2(6), MTHFR(3), PLAT(4), F5(6), PLG(2), F8(4), PROC(5), TFPI(2), SERPINA10(2)
0.222 0.455 1.99e-22 4.21e-21 ✓ sig. Cluster 55 →
Aplasia of the vermis Orofaciodigital syndrome
12 genes
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10 of 12 corroborated by 2+ sources
KIF7(3), WDPCP(1), CPLANE1(6), TMEM216(3), TMEM231(3), KIAA0753(6), OFD1(6), TMEM17(1), TCTN3(6), FAM149B1(2), C2CD3(6), PDE6D(2)
0.160 0.375 1.99e-22 4.21e-21 ✓ sig. Cluster 8 →
Head and neck neoplasms Upper aerodigestive tract neoplasm
17 genes
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LAMC3(1), RERGL(1), IL1A(1), IL1B(1), CCDC192(1), HLA-DQB1(1), TBC1D1(1), CTLA4(1), MACO1(1), STK31(1), CBLB(1), ADH1C(1) +5 more
0.089 0.362 1.88e-22 3.98e-21 ✓ sig. —
Hemolytic uremic syndrome Mesangiocapillary glomerulonephritis
8 genes
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8 of 8 corroborated by 2+ sources
CFHR1(4), CFI(6), C3(6), CD46(6), CFB(6), CFH(6), CFHR5(2), DGKE(6)
0.235 1.000 1.77e-22 3.76e-21 ✓ sig. Cluster 359 →
Non-small cell lung carcinoma Seborrheic keratosis
14 genes
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2 of 14 corroborated by 2+ sources
TERT(2), TP63(1), BNC2(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), LPP(1), TYR(1), DEF8(1), CASP8(2), FLACC1(1) +2 more
0.105 0.452 1.77e-22 3.75e-21 ✓ sig. Cluster 29 →
Congenital muscular dystrophy due to dystroglycanopathy Muscle eye brain disease
7 genes
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6 of 7 corroborated by 2+ sources
GMPPB(3), LARGE1(2), CRPPA(2), POMGNT1(3), TSPAN1(1), FKRP(3), B3GALNT2(3)
0.438 1.000 1.58e-22 3.36e-21 ✓ sig. Cluster 14 →
Deafness Usher syndrome
17 genes
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15 of 17 corroborated by 2+ sources
PAX3(2), PCDH15(7), USH2A(7), ADGRV1(7), PSAP(1), CDH23(8), MYO7A(7), COCH(3), CIB2(6), ESPN(6), OTOA(3), SERPINB6(3) +5 more
0.085 0.386 1.55e-22 3.29e-21 ✓ sig. Cluster 26 →
Idiopathic pulmonary fibrosis Pulmonary fibrosis
18 genes
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12 of 18 corroborated by 2+ sources
KANSL1(1), RTEL1(4), TERT(4), PARN(3), PLAU(2), STAT3(2), TNF(2), DSP(4), PTGS2(1), MUC5B(4), MUC5AC(1), SFTPC(3) +6 more
0.105 0.220 1.30e-22 2.77e-21 ✓ sig. —
Cerebrovascular disorder Vascular disease
15 genes
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10 of 15 corroborated by 2+ sources
AGT(2), HDAC9(2), MTHFR(2), TNF(2), ATXN2(1), TWIST1(1), ABO(2), CELSR2(1), LPA(1), PSRC1(1), F5(2), IL1RN(2) +3 more
0.123 0.288 1.15e-22 2.45e-21 ✓ sig. Cluster 307 →
Cataract-microcornea syndrome Congenital cataract
9 genes
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9 of 9 corroborated by 2+ sources
CRYBB2(3), MAF(4), CRYAA(4), CRYBA4(3), NHS(2), GJA8(4), CRYGC(4), CRYBB1(4), CRYGD(3)
0.148 1.000 1.11e-22 2.35e-21 ✓ sig. Cluster 43 →
Platelet-type bleeding disorder Thrombocytopenia
13 genes
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12 of 13 corroborated by 2+ sources
ITGB3(6), MED12L(1), ITGA2(2), ITGA2B(6), TPM4(4), P2RY12(6), GNE(4), FLI1(5), ACTN1(6), GFI1B(5), SLFN14(6), RASGRP2(7) +1 more
0.088 0.650 1.09e-22 2.33e-21 ✓ sig. Cluster 33 →
Polycystic kidney disease Polycystic liver disease
11 genes
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8 of 11 corroborated by 2+ sources
ALG8(6), ALG9(5), LRP6(1), PKD2(8), PKHD1(8), LRP5(5), GANAB(7), SEC63(6), DKK3(1), PRKCSH(6), ONECUT2(1)
0.180 0.478 1.03e-22 2.21e-21 ✓ sig. Cluster 23 →
Ehlers-danlos syndrome Loeys-dietz syndrome
10 genes
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8 of 10 corroborated by 2+ sources
FBN1(2), COL5A1(8), FBN2(1), TGFB2(6), SMAD3(4), COL3A1(7), MYH11(1), TGFBR1(6), TGFBR2(7), COL5A2(8)
0.196 0.625 9.54e-23 2.04e-21 ✓ sig. Cluster 12 →
Gastroesophageal reflux disease Substance abuse
50 genes
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2 of 50 corroborated by 2+ sources
CACNA1D(1), ADGRL2(1), AFF3(1), AKAP6(1), CABP1(1), CACNA1A(1), CAMTA1(1), CAPZA3(1), CCKBR(2), CNTNAP5(1), DCC(1), ERBB3(1) +38 more
0.067 0.179 9.36e-23 2.00e-21 ✓ sig. Cluster 2 →
Bardet-biedl syndrome Senior-loken syndrome
10 genes
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8 of 10 corroborated by 2+ sources
NPHP4(6), NPHP3(3), AKT3(1), NPHP1(6), CEP290(6), WDR19(5), SCLT1(4), SDCCAG8(7), IQCB1(6), RLIG1(1)
0.159 0.769 8.65e-23 1.85e-21 ✓ sig. Cluster 8 →
Congenital hypothyroidism Thyroid agenesis
7 genes
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4 of 7 corroborated by 2+ sources
TSHR(3), NKX2-5(2), THRA(1), PAX8(2), SLC26A4(1), TSHB(1), IGSF1(2)
0.467 1.000 8.44e-23 1.81e-21 ✓ sig. Cluster 88 →
Joubert syndrome Nephronophthisis
13 genes
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11 of 13 corroborated by 2+ sources
NPHP4(7), ZNF423(6), CPLANE1(6), CC2D2A(5), RPGRIP1L(5), NPHP3(6), TMEM67(6), NPHP1(7), CEP290(6), IFT140(1), TTC21B(5), AHI1(8) +1 more
0.151 0.325 8.07e-23 1.73e-21 ✓ sig. Cluster 8 →
Hepatic insufficiency Hepatomegaly
9 genes
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NOS3(1), NFE2L2(1), RELA(1), ALB(1), TGFB1(1), KEAP1(1), NOS2(1), MAPK14(1), CYGB(1)
0.153 1.000 7.96e-23 1.71e-21 ✓ sig. Cluster 153 →
Cryptogenic west syndrome West syndrome
8 genes
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CRH(1), POMC(1), STXBP1(1), TSC2(1), TSC1(1), UPB1(1), HSD17B4(1), MC2R(1)
0.258 1.000 7.48e-23 1.61e-21 ✓ sig. Cluster 328 →
Ciliopathy Meckel-gruber syndrome
13 genes
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13 of 13 corroborated by 2+ sources
CC2D2A(6), RPGRIP1L(6), TMEM67(7), TMEM138(3), TMEM216(7), TMEM231(6), MKS1(8), B9D1(6), B9D2(7), TCTN3(4), TMEM107(5), TMEM218(2) +1 more
0.141 0.394 7.10e-23 1.53e-21 ✓ sig. Cluster 8 →
Iga nephropathy Systemic lupus erythematosus
48 genes
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19 of 48 corroborated by 2+ sources
RREB1(1), NOTCH2(2), AFF3(1), ANKRD55(1), CTNNA3(1), DOCK10(1), ETS1(4), HLA-DQA1(3), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(4), IKZF1(3) +36 more
0.059 0.236 6.13e-23 1.32e-21 ✓ sig. Cluster 28 →
Focal glomerulosclerosis Steroid-resistant nephrotic syndrome
10 genes
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WT1(1), COL4A5(1), COL4A4(1), PAX2(1), APOL1(1), CRB2(1), SMARCAL1(1), AXDND1(1), NPHS2(1), NPHS1(1)
0.164 0.769 5.95e-23 1.28e-21 ✓ sig. —
Cerebrovascular disorder Heart disease
20 genes
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13 of 20 corroborated by 2+ sources
FGA(2), AGT(2), APOE(2), HDAC9(2), LDLR(1), SMARCA4(1), F2(2), ATXN2(1), ALB(2), TGFB1(2), ABO(2), CELSR2(1) +8 more
0.095 0.238 5.80e-23 1.25e-21 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.