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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diabetes mellitus Gestational diabetes
24 genes
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7 of 24 corroborated by 2+ sources
CDKAL1(2), GLIS3(1), HLA-DQB3(1), LINGO2(1), TCF7L2(2), ZBTB20(3), ZNF804A(1), INSR(1), IL6(1), HLA-DQB1(1), GCKR(1), KCNQ1(1) +12 more
0.066 0.267 3.59e-21 7.20e-20 ✓ sig. Cluster 73 →
Hashimoto disease Hyperthyroidism
11 genes
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2 of 11 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), ICOS(1), BACH2(1), CTLA4(3), IL2RA(1), PTPN22(1), TG(3), LPP(1), VAV3(1), PDE8B(1)
0.157 0.407 3.32e-21 6.65e-20 ✓ sig. Cluster 39 →
Permanent neonatal diabetes mellitus Transient neonatal diabetes mellitus
7 genes
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7 of 7 corroborated by 2+ sources
HNF1B(2), INS(5), GATA4(2), ABCC8(6), KCNJ11(6), GCK(6), SLC2A2(2)
0.412 0.778 3.04e-21 6.10e-20 ✓ sig. Cluster 36 →
Left ventricular noncompaction cardiomyopathy Restrictive cardiomyopathy
10 genes
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3 of 10 corroborated by 2+ sources
PRDM16(1), DMD(1), MYPN(3), DSP(1), MYH6(1), MYH7(1), TTN(1), ACTC1(1), TNNI3(3), TNNT2(3)
0.192 0.435 2.57e-21 5.17e-20 ✓ sig. Cluster 4 →
Anophthalmia Microphthalmia
9 genes
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9 of 9 corroborated by 2+ sources
RARB(7), PAX6(2), SOX2(3), STRA6(3), OTX2(3), RAX(3), VSX2(6), RBP4(5), SMOC1(5)
0.205 0.643 2.42e-21 4.87e-20 ✓ sig. Cluster 56 →
Thromboembolism Venous thrombosis
8 genes
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PLAU(1), F2(1), PLAT(1), JAK2(1), LPA(1), F5(1), PROC(1), F7(1)
0.296 0.667 2.02e-21 4.06e-20 ✓ sig. Cluster 55 →
Centronuclear myopathy Congenital structural myopathy
8 genes
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6 of 8 corroborated by 2+ sources
BIN1(4), MTM1(1), MTMR14(3), RYR1(3), TPM3(1), DNM2(4), MYF6(2), CCDC78(3)
0.296 0.667 2.02e-21 4.06e-20 ✓ sig. Cluster 189 →
Gallstones Liver disease
22 genes
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7 of 22 corroborated by 2+ sources
SERPINA1(3), ABCG8(2), APOE(1), ARHGEF28(1), GCKR(1), CCK(2), ABCB1(1), HNF4A(1), UGT1A10(1), UGT1A8(1), UGT1A9(1), CYP7A1(1) +10 more
0.085 0.177 1.96e-21 3.95e-20 ✓ sig. —
Isolated sensorineural deafness Nonsyndromic intellectual disability
21 genes
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21 of 21 corroborated by 2+ sources
OTOF(4), OTOGL(2), PNPT1(3), TMC1(4), MET(3), DCDC2(3), TBC1D24(2), CABP2(3), LOXHD1(3), PTPRQ(3), KARS1(3), ELMOD3(3) +9 more
0.088 0.176 1.85e-21 3.73e-20 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia Conduction disorder of the heart
9 genes
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4 of 9 corroborated by 2+ sources
DSG2(1), PKP2(2), TRPM4(1), DSP(1), CASQ2(7), KCNH2(1), RYR2(7), SCN5A(1), ANK2(3)
0.250 0.450 1.63e-21 3.29e-20 ✓ sig. Cluster 4 →
Adult myoclonic epilepsy Benign myoclonic epilepsy
6 genes
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6 of 6 corroborated by 2+ sources
CTNND2(3), ADRA2B(3), CNTN2(3), MARCHF6(3), SAMD12(3), YEATS2(3)
0.667 1.000 1.51e-21 3.07e-20 ✓ sig. Cluster 357 →
Intrahepatic bile duct cancer Liver cancer
6 genes
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GATAD2A(1), MAU2(1), HLA-DQB1(1), IFNL3(1), PNPLA3(1), KLHL8(1)
0.667 1.000 1.51e-21 3.07e-20 ✓ sig. —
Iga nephropathy Ulcerative colitis
45 genes
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17 of 45 corroborated by 2+ sources
ATP2A2(1), NOTCH2(2), ANKRD55(1), CTNNA3(1), ETS1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(3), IFT81(1), IKZF1(3), RORA(1), SERINC5(1) +33 more
0.058 0.222 1.51e-21 3.07e-20 ✓ sig. Cluster 28 →
Cardiomegaly Ventricular remodeling
12 genes
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GATA4(1), AGT(1), LEP(1), AKT1(1), MFN2(1), NPPB(1), MYH6(1), TBX20(1), NPPA(1), HAND2(1), ROCK2(1), SIRT6(1)
0.122 0.480 1.50e-21 3.05e-20 ✓ sig. —
Ciliopathy Nephronophthisis
13 genes
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12 of 13 corroborated by 2+ sources
ZNF423(6), CC2D2A(3), RPGRIP1L(3), TMEM67(5), IFT172(4), WDR19(6), ADAMTS9(4), DCDC2(7), SDCCAG8(2), BBS9(1), IQCB1(4), CEP164(4) +1 more
0.131 0.325 1.46e-21 2.96e-20 ✓ sig. Cluster 8 →
Cataract Lamellar cataract
11 genes
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11 of 11 corroborated by 2+ sources
BFSP2(5), CRYAA(5), CRYBA4(6), CRYGC(6), CRYAB(6), CRYGD(6), CRYGS(6), HSF4(5), MIP(6), CRYBA1(4), CRYGB(6)
0.054 1.000 1.42e-21 2.90e-20 ✓ sig. Cluster 43 →
Cataract Posterior subcapsular cataract
11 genes
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11 of 11 corroborated by 2+ sources
CRYBB2(5), PITX3(5), EPHA2(6), CHMP4B(5), CRYAB(5), UNC45B(5), MIP(6), PANK4(4), CRYBA1(4), GJA3(4), LEMD2(6)
0.054 1.000 1.42e-21 2.90e-20 ✓ sig. Cluster 43 →
Anophthalmia Microphthalmos
9 genes
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3 of 9 corroborated by 2+ sources
RARB(1), PAX6(1), SOX2(2), STRA6(2), OTX2(1), RAX(2), VSX2(1), ARHGAP35(1), RBP4(1)
0.214 0.643 1.40e-21 2.85e-20 ✓ sig. Cluster 56 →
Cardiomegaly Ventricular dysfunction
14 genes
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ATP2A2(1), AGT(1), DMD(1), SOD2(1), TNF(1), AKT1(1), IDH2(1), NPPB(1), MYH6(1), TNNT2(1), PLPP3(1), FNDC5(1) +2 more
0.120 0.304 1.38e-21 2.82e-20 ✓ sig. —
Atrial septal defect Tetralogy of fallot
14 genes
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13 of 14 corroborated by 2+ sources
GATA4(6), ROBO1(2), SMARCA4(2), TBX5(2), TLL1(6), CHD7(2), MYH6(6), TBX20(6), NKX2-5(7), ACTC1(5), TPM1(1), CITED2(6) +2 more
0.103 0.400 1.33e-21 2.71e-20 ✓ sig. —
Bone disease Osteoporosis
19 genes
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7 of 19 corroborated by 2+ sources
BMP2(2), AXIN1(1), HLA-DQA1(1), HLA-DRB1(1), RSPO3(1), CYP19A1(3), ESR1(2), ZBTB40(1), PTH(2), ALDH7A1(3), CCDC170(1), DDN(1) +7 more
0.090 0.232 1.30e-21 2.65e-20 ✓ sig. —
Hypertension Migraine
90 genes
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27 of 90 corroborated by 2+ sources
CASZ1(1), PRDM16(3), RERE(1), RUNX1(1), ATP1A2(5), ACTN4(1), ASCC1(1), C1GALT1(1), CAMK1D(1), CDH13(1), CDH4(1), CTNNA3(1) +78 more
0.061 0.223 1.27e-21 2.60e-20 ✓ sig. Cluster 78 →
Coronary artery disease Open angle glaucoma
85 genes
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18 of 85 corroborated by 2+ sources
NFIA(1), PRDM16(3), ZFPM2(1), TP53(1), ABCA1(2), ALCAM(1), APOE(3), ARHGAP20(1), BCAS3(1), BNC2(1), CDKN2B(3), CLIC5(1) +73 more
0.060 0.230 1.26e-21 2.58e-20 ✓ sig. —
Focal segmental glomerulosclerosis Idiopathic steroid-resistant nephrotic syndrome
10 genes
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10 of 10 corroborated by 2+ sources
NUP107(2), ACTN4(4), ARHGAP24(2), CD2AP(6), MYO1E(5), PAX2(5), TRPC6(5), ANLN(4), CRB2(5), INF2(5)
0.208 0.357 1.25e-21 2.57e-20 ✓ sig. Cluster 30 →
Cutaneous mastocytosis Mastocytosis
9 genes
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1 of 9 corroborated by 2+ sources
RPTN(1), HBE1(1), HBG2(1), KIT(6), ABCA2(1), CYP2B6(1), OR51B5(1), OR51Q1(1), PDE4DIP(1)
0.243 0.529 1.24e-21 2.55e-20 ✓ sig. Cluster 235 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.