Gene Gene information from NCBI Gene database.
Entrez ID 477
Gene name ATPase Na+/K+ transporting subunit alpha 2
Gene symbol ATP1A2
Synonyms (NCBI Gene)
DEE98FARIMPDFHM2MHP2
Chromosome 1
Chromosome location 1q23.2
Summary The protein encoded by this gene belongs to the family of P-type cation transport ATPases, and to the subfamily of Na+/K+ -ATPases. Na+/K+ -ATPase is an integral membrane protein responsible for establishing and maintaining the electrochemical gradients o
SNPs SNP information provided by dbSNP.
61
SNP ID Visualize variation Clinical significance Consequence
rs28933398 T>C Pathogenic Coding sequence variant, missense variant
rs28933399 T>C Pathogenic Coding sequence variant, missense variant
rs28933400 T>C Pathogenic Coding sequence variant, missense variant
rs28933401 G>A Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs28934002 C>A,T Pathogenic, uncertain-significance Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
228
miRTarBase ID miRNA Experiments Reference
MIRT003095 hsa-miR-122-5p Luciferase reporter assayqRT-PCR 19296470
MIRT048595 hsa-miR-100-5p CLASH 23622248
MIRT047687 hsa-miR-10a-5p CLASH 23622248
MIRT663269 hsa-miR-4524b-3p HITS-CLIP 23824327
MIRT663258 hsa-miR-411-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
147
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001504 Process Neurotransmitter uptake IEA
GO:0001504 Process Neurotransmitter uptake ISS
GO:0001662 Process Behavioral fear response IEA
GO:0001662 Process Behavioral fear response ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
182340 800 ENSG00000018625
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P50993
Protein name Sodium/potassium-transporting ATPase subunit alpha-2 (Na(+)/K(+) ATPase alpha-2 subunit) (EC 7.2.2.13) (Sodium pump subunit alpha-2)
Protein function This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassi
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00690 Cation_ATPase_N 41 109 Cation transporter/ATPase, N-terminus Domain
PF00122 E1-E2_ATPase 161 352 Family
PF13246 Cation_ATPase 424 518 Family
PF00689 Cation_ATPase_C 796 1005 Cation transporting ATPase, C-terminus Family
Sequence
MGRGAGREYSPAATTAENGGGKKKQKEKELDELKKEVAMDDHKLSLDELGRKYQVDLSKG
LTNQRAQDVLARDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILC
FLAYGIQAAME
DEPSNDNLYLGVVLAAVVIVTGCFSYYQEAKSSKIMDSFKNMVPQQALVIREGEKMQINA
EEVVVGDLVEVKGGDRVPADLRIISSHGCKVDNSSLTGESEPQTRSPEFTHENPLETRNI
CFFSTNCVEGTARGIVIATGDRTVMGRIATLASGLEVGRTPIAMEIEHFIQLITGVAVFL
GVSFFVLSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARK
NCLVKNLE
AVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALS
RIAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGSVRKMRDRNPKVAEIPF
NSTNKYQLSIHEREDSPQSHVLVMKGAPERILDRCSTI
LVQGKEIPLDKEMQDAFQNAYM
ELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVGLMSMIDPPRAAVPDAV
GKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPMSQVNPREAKAC
VVHGSDLKDMTSEQLDEILKNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSP
ALKKADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN
IPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDK
LVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPSRLLGIRLDWDDRTMNDLEDSYG
QEWTYEQRKVVEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETA
LAAFLSYCPGMGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLI
LRRYPGGWVEKETYY
Sequence length 1020
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
38
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Alternating hemiplegia of childhood Likely pathogenic rs1651974671 RCV001258054
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alternating hemiplegia of childhood 1 Likely pathogenic; Pathogenic rs770053423, rs1558009266, rs2101995480, rs765909830, rs28934002, rs121918615, rs181618883, rs1553245857, rs1553244746 RCV001331358
RCV001814601
RCV001777180
RCV002247600
RCV000013784
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ATP1A2-related disorder Pathogenic; Likely pathogenic rs761168835, rs28934002, rs121918616, rs2524868404, rs2524854159, rs2524888314, rs181618883, rs1414742926 RCV004725349
RCV005249988
RCV004555532
RCV003404569
RCV003414232
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental and epileptic encephalopathy 98 Likely pathogenic; Pathogenic rs2101996488, rs1553244881, rs796052277, rs1057521630, rs121918616, rs2524867724, rs181618883, rs1553245857, rs1553244883, rs777400961 RCV001777179
RCV005632305
RCV003152594
RCV003128284
RCV004819208
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATP1A2-associated neurological disorder Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BENIGN NEONATAL EPILEPSY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIPOLAR DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Developmental and epileptic encephalopathy, 1 Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute encephalopathy Encephalopathy BEFREE 23761507
★☆☆☆☆
Found in Text Mining only
Adrenal Hyperplasia Congenital Congenital adrenal hyperplasia Pubtator 35177115 Associate
★☆☆☆☆
Found in Text Mining only
Alternating hemiplegia of childhood Alternating Hemiplegia BEFREE 15174025, 15534763, 28637637, 31608932
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alternating hemiplegia of childhood Alternating Hemiplegia ORPHANET_DG 15286158
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alternating hemiplegia of childhood Alternating Hemiplegia Orphanet
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alternating hemiplegia of childhood Alternating hemiplegia of childhood Pubtator 33794876, 35177115, 36749827 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alternating hemiplegia of childhood Alternating Hemiplegia CTD_human_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ALTERNATING HEMIPLEGIA OF CHILDHOOD 1 Alternating Hemiplegia GENOMICS_ENGLAND_DG 12539047, 12953268, 18056581
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ALTERNATING HEMIPLEGIA OF CHILDHOOD 1 Alternating Hemiplegia UNIPROT_DG 15174025
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ALTERNATING HEMIPLEGIA OF CHILDHOOD 1 Alternating Hemiplegia BEFREE 30690204
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)