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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lacrimoauriculodentodigital syndrome Ladd syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(5), FGF10(6), FGFR2(7)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. —
11p11.2 deletion syndrome Potocki-shaffer syndrome
3 genes
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3 of 3 corroborated by 2+ sources
ALX4(2), EXT2(2), PHF21A(3)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 93 →
3mc syndrome Malpuech facial clefting syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COLEC10(3), COLEC11(3), MASP1(4)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 353 →
Afibrinogenemia Congenital afibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(3), FGG(3), FGB(3)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 149 →
Afibrinogenemia Congenital fibrinogen deficiency
3 genes
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3 of 3 corroborated by 2+ sources
FGA(4), FGG(4), FGB(4)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 149 →
Afibrinogenemia Congenital hypofibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(2), FGG(2), FGB(2)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 149 →
Afibrinogenemia Hypofibrinogenemia
3 genes
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3 of 3 corroborated by 2+ sources
FGA(3), FGG(3), FGB(3)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 149 →
Alpha thalassemia Hemoglobin barts fetalis syndrome
3 genes
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2 of 3 corroborated by 2+ sources
HBA1(3), HBA2(3), ATRX(1)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 72 →
Alpha thalassemia Hemoglobin h disease
3 genes
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2 of 3 corroborated by 2+ sources
HBA1(5), HBA2(6), ATRX(1)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 72 →
Familial polycythemia Polycythemia, primary familial and congenital
3 genes
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3 of 3 corroborated by 2+ sources
SH2B3(2), EPOR(4), JAK2(2)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. —
Glucocorticoid deficiency with achalasia Triple a syndrome
3 genes
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3 of 3 corroborated by 2+ sources
TRAPPC11(2), AAAS(4), GMPPA(2)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 295 →
Benign mucous membrane pemphigoid Benign mucous membrane pemphigoid with ocular involvement
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DRB1(1), HLA-DQB1(1), PTGER3(2)
0.750 1.000 1.64e-12 1.92e-11 ✓ sig. Cluster 1 →
Ischemic stroke Thrombosis
8 genes
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8 of 8 corroborated by 2+ sources
PLAU(2), F2(2), TNF(2), PLAT(2), F5(2), PROC(2), PROS1(2), THBD(2)
0.090 0.178 1.60e-12 1.90e-11 ✓ sig. Cluster 55 →
Congenital impairment of spermatozoa motility Teratozoospermia
6 genes
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ARMC2(1), CFAP43(1), DNAH1(1), AKAP4(1), TTC21A(1), USP26(1)
0.133 0.261 1.58e-12 1.88e-11 ✓ sig. Cluster 31 →
Melas syndrome Progressive external ophthalmoplegia
5 genes
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5 of 5 corroborated by 2+ sources
IL1A(2), IL1B(2), SOD2(2), SOD1(2), POLG(3)
0.185 0.385 1.52e-12 1.81e-11 ✓ sig. Cluster 32 →
Autoimmune hepatitis Glomerulonephritis
9 genes
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7 of 9 corroborated by 2+ sources
HLA-DQA1(1), F2(1), IL10(2), IL2(2), IL6(2), IFNG(2), CCL2(2), IL18(2), CCL5(2)
0.071 0.237 1.50e-12 1.79e-11 ✓ sig. Cluster 16 →
Diabetic cardiomyopathy Ventricular dysfunction
6 genes
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6 of 6 corroborated by 2+ sources
INS(2), ATP2A2(2), AGT(2), IGF2R(2), TNF(2), LEPR(2)
0.109 0.429 1.49e-12 1.78e-11 ✓ sig. —
Saldino-noonan syndrome Short rib dysplasia-polydactyly syndrome
5 genes
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5 of 5 corroborated by 2+ sources
NEK1(3), DYNC2H1(4), DYNC2I1(4), DYNC2I2(4), DYNLT2B(2)
0.167 0.500 1.48e-12 1.76e-11 ✓ sig. Cluster 22 →
Achromatopsia Cone dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
CNGA3(3), CNGB3(4), GNAT2(4), PDE6C(7), PDE6H(2)
0.122 0.714 1.46e-12 1.74e-11 ✓ sig. —
Myasthenia gravis Uveomeningoencephalitic syndrome
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), FAS(2), HLA-DQB1(1), PTPN22(2)
0.122 0.714 1.46e-12 1.74e-11 ✓ sig. Cluster 1 →
Nervous system disease Peripheral nervous system disease
9 genes
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9 of 9 corroborated by 2+ sources
DPYD(2), GFAP(2), NGF(2), PNPLA6(2), CSF3(2), ABCB1(2), CYP2C8(2), CASP9(2), ATF3(2)
0.080 0.170 1.40e-12 1.67e-11 ✓ sig. Cluster 243 →
Differentiated thyroid carcinoma Thyroid neoplasms
8 genes
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8 of 8 corroborated by 2+ sources
TERT(3), BRAF(2), RET(3), PPARG(2), KRAS(2), HRAS(2), TPR(2), NCOA4(2)
0.091 0.174 1.37e-12 1.64e-11 ✓ sig. —
Congenital hyperinsulinism monogenic diabetes
4 genes
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4 of 4 corroborated by 2+ sources
ABCC8(3), HNF4A(3), KCNJ11(3), GCK(3)
0.308 0.667 1.34e-12 1.61e-11 ✓ sig. Cluster 36 →
Laryngeal carcinoma Laryngeal neoplasms
4 genes
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ATXN10(1), PRKG1(1), WNT7B(1), SH3BP4(1)
0.308 0.667 1.34e-12 1.61e-11 ✓ sig. —
46,xx ovotesticular disorder of sex development Swyer syndrome
4 genes
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3 of 4 corroborated by 2+ sources
NR5A1(1), DMRT1(2), SOX9(2), SRY(2)
0.308 0.667 1.34e-12 1.61e-11 ✓ sig. Cluster 38 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.