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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hyperplasia Ventricular remodeling
5 genes
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TCF7L2(1), LEP(1), NFE2L2(1), AKT1(1), TGFB1(1)
0.096 0.200 1.22e-9 1.10e-8 ✓ sig. —
Bladder calculus Hypertensive nephropathy
5 genes
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PRKAG2(1), HBB(1), PDILT(1), OVOL1(1), SLC22A2(1)
0.091 0.250 1.20e-9 1.08e-8 ✓ sig. —
Neuroblastoma Stomach neoplasms
18 genes
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5 of 18 corroborated by 2+ sources
CHEK2(1), TP53(2), ARID1A(1), IL1B(1), TNF(1), FHIT(2), RELA(1), KRAS(1), MET(1), LGALS3(2), MYC(1), CDKN2A(1) +6 more
0.041 0.119 1.19e-9 1.07e-8 ✓ sig. Cluster 5 →
Diabetic nephropathy type 1 Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DQB1(2), PTPN22(2)
0.273 0.500 1.15e-9 1.04e-8 ✓ sig. Cluster 1 →
C1 esterase inhibitor deficiency Terminal complement component deficiency
3 genes
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C8B(1), C9(1), C8A(1)
0.273 0.500 1.15e-9 1.04e-8 ✓ sig. Cluster 383 →
Corneal astigmatism Open angle glaucoma
14 genes
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BNC2(1), HERC2(1), MADD(1), VAV2(1), ADAMTS8(1), ANGPT1(1), FMNL2(1), CALN1(1), LMO7(1), TNR(1), FLI1(1), BICC1(1) +2 more
0.033 0.197 1.13e-9 1.01e-8 ✓ sig. Cluster 240 →
Developmental disability syndromic intellectual disability
8 genes
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8 of 8 corroborated by 2+ sources
AUTS2(2), KDM3B(2), CHD4(3), ASXL2(2), CSNK2A1(2), NAA15(2), KIF1A(3), KDM6B(2)
0.047 0.222 1.10e-9 9.96e-9 ✓ sig. —
Sideroblastic anemia X-linked sideroblastic anemia
3 genes
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3 of 3 corroborated by 2+ sources
ABCB7(5), ALAS2(6), SLC25A38(5)
0.231 0.750 1.08e-9 9.79e-9 ✓ sig. Cluster 158 →
Alport syndrome Hematuria
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(7), COL4A4(8)
0.231 0.750 1.08e-9 9.79e-9 ✓ sig. Cluster 49 →
Alport syndrome, x-linked Hematuria
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(4), COL4A3(4), COL4A4(5)
0.231 0.750 1.08e-9 9.79e-9 ✓ sig. Cluster 49 →
Aplastic anemia Hoyeraal hreidarsson syndrome
4 genes
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3 of 4 corroborated by 2+ sources
ACD(3), TERT(6), POT1(1), DKC1(4)
0.108 0.500 1.07e-9 9.66e-9 ✓ sig. Cluster 64 →
Catalepsy Dyskinesia, drug-induced
4 genes
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4 of 4 corroborated by 2+ sources
DRD1(2), DRD2(2), CCK(2), TH(2)
0.143 0.267 1.05e-9 9.53e-9 ✓ sig. Cluster 13 →
Calcinosis Cervical disc degenerative disorder
4 genes
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4 of 4 corroborated by 2+ sources
IL1B(2), TNF(2), TGFB1(2), COL1A1(2)
0.082 0.667 1.04e-9 9.41e-9 ✓ sig. —
Graft-versus-host disease T-cell leukemia-lymphoma
5 genes
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5 of 5 corroborated by 2+ sources
IL10(3), IL2(2), IFNG(2), CTLA4(2), TNFSF8(2)
0.094 0.238 1.04e-9 9.37e-9 ✓ sig. Cluster 147 →
Cachexia Oral submucous fibrosis
4 genes
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3 of 4 corroborated by 2+ sources
TNF(2), IL6(2), PTGS2(2), CXCL8(1)
0.138 0.333 1.02e-9 9.21e-9 ✓ sig. Cluster 76 →
Angina pectoris Oral submucous fibrosis
4 genes
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3 of 4 corroborated by 2+ sources
TNF(2), MMP1(2), MMP9(2), CXCL8(1)
0.138 0.333 1.02e-9 9.21e-9 ✓ sig. Cluster 76 →
Henoch schoenlein purpura Lupus nephritis
5 genes
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3 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), C3(2), HLA-DQB1(1), CCL2(1)
0.089 0.278 9.85e-10 8.93e-9 ✓ sig. Cluster 1 →
46,xx sex reversal 46,xy partial gonadal dysgenesis
3 genes
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3 of 3 corroborated by 2+ sources
NR5A1(3), SOX9(2), SRY(2)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. Cluster 38 →
Aneuploidy Chromosomal instability
3 genes
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CKAP5(1), AURKA(1), KIF11(1)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. —
Secondary polycythemia Thalassemia
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(2), HBA2(2), HBB(2)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. —
Telomere syndrome Telomere-related pulmonary fibrosis and/or bone marrow failure
3 genes
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3 of 3 corroborated by 2+ sources
RTEL1(6), TERT(5), PARN(6)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. Cluster 64 →
Hoyeraal hreidarsson syndrome Telomere syndrome
3 genes
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3 of 3 corroborated by 2+ sources
RTEL1(2), TERT(4), PARN(2)
0.273 0.600 9.20e-10 8.34e-9 ✓ sig. Cluster 64 →
Gastrointestinal stromal tumor Microform holoprosencephaly
5 genes
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5 of 5 corroborated by 2+ sources
CDON(3), GLI2(3), PTCH1(3), SUFU(3), DISP1(3)
0.085 0.313 9.06e-10 8.24e-9 ✓ sig. Cluster 96 →
Brain ischemia Transient ischemic attack
6 genes
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5 of 6 corroborated by 2+ sources
CYCS(2), SOD2(2), SOD1(2), CSF3(1), IL1RN(2), CASP9(2)
0.067 0.250 8.95e-10 8.13e-9 ✓ sig. —
Diffuse large b-cell lymphoma Lymphoma
7 genes
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BCL2(1), KMT2D(1), EXOC2(1), IRF4(1), CDKN2A(1), EZH2(1), MYD88(1)
0.067 0.132 8.79e-10 7.99e-9 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.