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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Calcinosis Cervical disc degenerative disorder
4 genes
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4 of 4 corroborated by 2+ sources
IL1B(2), TNF(2), TGFB1(2), COL1A1(2)
0.082 0.667 1.04e-9 9.41e-9 ✓ sig. —
Catalepsy Dyskinesia, drug-induced
4 genes
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4 of 4 corroborated by 2+ sources
DRD1(2), DRD2(2), CCK(2), TH(2)
0.143 0.267 1.05e-9 9.53e-9 ✓ sig. Cluster 13 →
Aplastic anemia Hoyeraal hreidarsson syndrome
4 genes
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3 of 4 corroborated by 2+ sources
ACD(3), TERT(6), POT1(1), DKC1(4)
0.108 0.500 1.07e-9 9.66e-9 ✓ sig. Cluster 64 →
Alport syndrome Hematuria
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(7), COL4A4(8)
0.231 0.750 1.08e-9 9.79e-9 ✓ sig. Cluster 49 →
Alport syndrome, x-linked Hematuria
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(4), COL4A3(4), COL4A4(5)
0.231 0.750 1.08e-9 9.79e-9 ✓ sig. Cluster 49 →
Sideroblastic anemia X-linked sideroblastic anemia
3 genes
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3 of 3 corroborated by 2+ sources
ABCB7(5), ALAS2(6), SLC25A38(5)
0.231 0.750 1.08e-9 9.79e-9 ✓ sig. Cluster 158 →
Developmental disability syndromic intellectual disability
8 genes
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8 of 8 corroborated by 2+ sources
AUTS2(2), KDM3B(2), CHD4(3), ASXL2(2), CSNK2A1(2), NAA15(2), KIF1A(3), KDM6B(2)
0.047 0.222 1.10e-9 9.96e-9 ✓ sig. —
Corneal astigmatism Open angle glaucoma
14 genes
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BNC2(1), HERC2(1), MADD(1), VAV2(1), ADAMTS8(1), ANGPT1(1), FMNL2(1), CALN1(1), LMO7(1), TNR(1), FLI1(1), BICC1(1) +2 more
0.033 0.197 1.13e-9 1.01e-8 ✓ sig. Cluster 240 →
C1 esterase inhibitor deficiency Terminal complement component deficiency
3 genes
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C8B(1), C9(1), C8A(1)
0.273 0.500 1.15e-9 1.04e-8 ✓ sig. Cluster 383 →
Diabetic nephropathy type 1 Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DQB1(2), PTPN22(2)
0.273 0.500 1.15e-9 1.04e-8 ✓ sig. Cluster 1 →
Neuroblastoma Stomach neoplasms
18 genes
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5 of 18 corroborated by 2+ sources
CHEK2(1), TP53(2), ARID1A(1), IL1B(1), TNF(1), FHIT(2), RELA(1), KRAS(1), MET(1), LGALS3(2), MYC(1), CDKN2A(1) +6 more
0.041 0.119 1.19e-9 1.07e-8 ✓ sig. Cluster 5 →
Bladder calculus Hypertensive nephropathy
5 genes
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PRKAG2(1), HBB(1), PDILT(1), OVOL1(1), SLC22A2(1)
0.091 0.250 1.20e-9 1.08e-8 ✓ sig. —
Hyperplasia Ventricular remodeling
5 genes
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TCF7L2(1), LEP(1), NFE2L2(1), AKT1(1), TGFB1(1)
0.096 0.200 1.22e-9 1.10e-8 ✓ sig. —
Central nervous system non-hodgkin lymphoma Nasal polyp
4 genes
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HLA-DQA1(1), HLA-DRB1(1), IRF4(1), BACH2(1)
0.093 0.571 1.22e-9 1.10e-8 ✓ sig. —
Contact dermatitis Obstructive airway disease
9 genes
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9 of 9 corroborated by 2+ sources
GSTP1(2), HMOX1(2), TLR4(2), CRHR1(2), CYP1A1(2), CD86(2), DEFB1(2), NQO1(2), SOD3(2)
0.054 0.120 1.26e-9 1.13e-8 ✓ sig. —
Mouth neoplasms Oral cavity carcinoma
6 genes
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4 of 6 corroborated by 2+ sources
LAMC3(2), HLA-B(1), ADH1B(2), CLPTM1L(2), PDE2A(1), GPN1(2)
0.070 0.214 1.29e-9 1.16e-8 ✓ sig. —
Cardiomegaly Pulmonary hypertension
8 genes
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1 of 8 corroborated by 2+ sources
NOS3(1), SOD2(1), TNF(1), CAV1(5), HIF1A(1), NPPB(1), EDN1(1), HTR2B(1)
0.058 0.131 1.30e-9 1.17e-8 ✓ sig. —
Diabetic angiopathies Sickle cell anemia
5 genes
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4 of 5 corroborated by 2+ sources
GCH1(1), NOS3(2), MTHFR(2), TNF(2), HP(2)
0.096 0.179 1.30e-9 1.17e-8 ✓ sig. —
Diabetic peripheral angiopathy Sickle cell anemia
5 genes
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2 of 5 corroborated by 2+ sources
GCH1(1), NOS3(1), MTHFR(1), TNF(2), HP(2)
0.096 0.179 1.30e-9 1.17e-8 ✓ sig. —
Cholangiocarcinoma Thyroid neoplasms
6 genes
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HNF1B(1), TP53(1), IL6(1), PTGS2(1), KRAS(1), SLC5A5(1)
0.076 0.158 1.30e-9 1.17e-8 ✓ sig. Cluster 5 →
Autoimmune hepatitis Urticaria
6 genes
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5 of 6 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(2), HLA-DQB1(3), TGFB1(2), HLA-DPB1(2), IL18(2)
0.076 0.158 1.30e-9 1.17e-8 ✓ sig. Cluster 16 →
Delirium, dementia, and cognitive disorders Movement disorder
7 genes
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5 of 7 corroborated by 2+ sources
CRH(2), DRD2(2), DRD3(2), MT1A(1), CNR1(2), FOSB(2), MT2A(1)
0.065 0.125 1.31e-9 1.18e-8 ✓ sig. —
Bouillaud’s disease Chorea
3 genes
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0.158 1.000 1.34e-9 1.20e-8 ✓ sig. Cluster 1 →
Melas syndrome Myoclonic epilepsy with ragged red fibers
3 genes
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3 of 3 corroborated by 2+ sources
IL1A(2), IL1B(2), ND5(2)
0.158 1.000 1.34e-9 1.20e-8 ✓ sig. Cluster 32 →
Cap myopathy Nemaline myopathy
3 genes
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3 of 3 corroborated by 2+ sources
MYPN(3), TPM2(4), TPM3(4)
0.158 1.000 1.34e-9 1.20e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.