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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Heart disease Vascular disease
13 genes
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4 of 13 corroborated by 2+ sources
AGT(2), HDAC9(1), EPO(2), GCG(2), ATXN2(1), ABO(1), SLC19A2(1), CELSR2(1), LPA(1), PSRC1(1), F5(1), TIMP1(2) +1 more
0.070 0.250 1.35e-15 2.00e-14 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked syndromic intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
CASK(3), RPL10(5), BRWD3(6), LAS1L(3), NONO(4), DDX3X(6), USP9X(6)
0.077 0.875 1.35e-15 2.00e-14 ✓ sig. —
Diabetic retinopathy Gestational diabetes
16 genes
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7 of 16 corroborated by 2+ sources
CDKAL1(2), TCF7L2(2), INSR(2), IL6(1), GAD2(2), HLA-DQB1(2), GCKR(1), KCNQ1(1), ADIPOQ(2), SLC30A8(1), TRIB2(1), CCND2(1) +4 more
0.067 0.178 1.42e-15 2.11e-14 ✓ sig. Cluster 73 →
Cardiomegaly Hypotension
12 genes
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ADRA1B(1), AGT(1), REN(1), IL1B(1), TNF(1), POMC(1), NPPB(1), NPPA(1), EDN1(1), ADRA2A(1), APLN(1), CTF1(1)
0.086 0.179 1.45e-15 2.14e-14 ✓ sig. —
Interstitial cystitis Pemphigus vulgaris
6 genes
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1 of 6 corroborated by 2+ sources
0.143 0.857 1.45e-15 2.15e-14 ✓ sig. Cluster 1 →
complex hereditary spastic paraplegia Spastic paraplegia
7 genes
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7 of 7 corroborated by 2+ sources
NT5C2(6), B4GALNT1(5), GBA2(5), DSTYK(6), VPS37A(6), ENTPD1(5), MAG(5)
0.058 1.000 1.46e-15 2.17e-14 ✓ sig. Cluster 244 →
Cerebrovascular disorder Peripheral arterial disease
16 genes
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7 of 16 corroborated by 2+ sources
SH2B3(2), HDAC9(2), LDLR(1), SMARCA4(1), MTHFR(1), ATXN2(1), IL6(2), TWIST1(1), ABO(2), CELSR2(1), LPA(1), F5(2) +4 more
0.065 0.190 1.52e-15 2.24e-14 ✓ sig. Cluster 307 →
Thrombocytopenia Venous thrombosis
10 genes
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10 of 10 corroborated by 2+ sources
F13A1(2), EPO(2), MTHFR(2), CSF2(2), PLAT(2), JAK2(2), LPA(2), SERPINC1(2), PLG(2), F7(2)
0.066 0.455 1.53e-15 2.26e-14 ✓ sig. —
Cone-rod dystrophy Night blindness, congenital stationary
9 genes
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6 of 9 corroborated by 2+ sources
ABCA4(7), CACNA1F(4), PDE6B(3), USH2A(1), GUCY2D(6), RBP3(1), CABP4(1), RHO(3), RPGR(3)
0.099 0.360 1.59e-15 2.35e-14 ✓ sig. —
Anxiety disorder Psychiatric disorders
21 genes
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7 of 21 corroborated by 2+ sources
RAI1(2), DCC(1), HTR1A(2), MAPT(2), SORCS3(1), THSD7A(1), TMEM106B(1), ZSCAN12(1), CRH(2), DRD2(3), MECP2(2), CACNA1C(3) +9 more
0.061 0.144 1.59e-15 2.35e-14 ✓ sig. —
Digeorge syndrome Velocardiofacial syndrome
5 genes
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5 of 5 corroborated by 2+ sources
TBX1(6), DGCR8(4), DGCR2(4), DGCR6(4), ESS2(4)
0.250 1.000 1.61e-15 2.38e-14 ✓ sig. —
46,xy partial gonadal dysgenesis Swyer syndrome
5 genes
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5 of 5 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(2), DHX37(2), MAP3K1(2)
0.357 0.625 1.96e-15 2.88e-14 ✓ sig. Cluster 38 →
Kidney disease Nephrolithiasis
25 genes
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8 of 25 corroborated by 2+ sources
BCAS3(1), L3MBTL3(1), PRKAG2(1), SHROOM3(1), STC1(1), VEGFA(1), WDR72(1), PTGS2(3), RNLS(2), FTO(1), PDILT(1), UMOD(3) +13 more
0.048 0.208 1.96e-15 2.89e-14 ✓ sig. —
Delirium, dementia, and cognitive disorders Memory disorders
10 genes
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10 of 10 corroborated by 2+ sources
COMT(2), INS(2), APP(2), PSEN1(2), IGF2(2), MAPT(2), DRD2(2), SLC6A4(2), CNR1(2), HTR2A(2)
0.102 0.196 1.98e-15 2.91e-14 ✓ sig. —
Perisylvian syndrome Polymicrogyria
6 genes
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5 of 6 corroborated by 2+ sources
CCND2(2), PI4KA(2), ADGRG1(3), SRPX2(2), TUBB2B(2), SCN3A(1)
0.200 0.600 2.00e-15 2.95e-14 ✓ sig. —
Conduction disorder of the heart Restrictive cardiomyopathy
7 genes
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1 of 7 corroborated by 2+ sources
DMD(1), DSP(1), CACNA1C(1), MYH6(1), FLNC(3), MYH7(1), TTN(1)
0.171 0.304 2.05e-15 3.02e-14 ✓ sig. Cluster 4 →
Hereditary hyperekplexia Hyperexplexia hereditary
4 genes
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4 of 4 corroborated by 2+ sources
GPHN(4), SLC6A5(4), GLRA1(4), GLRB(3)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 379 →
Hyperekplexia Hyperexplexia hereditary
4 genes
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4 of 4 corroborated by 2+ sources
GPHN(4), SLC6A5(6), GLRA1(4), GLRB(5)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 379 →
Apert syndrome Congenital malformation syndromes predominantly affecting facial appearance
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 48 →
Apert syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 48 →
Cleft eyelid Congenital iris coloboma
4 genes
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PAX6(1), FZD5(1), ABCB6(1), SALL2(1)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 272 →
Butterfly-shaped pigmentary macular dystrophy Patterned macular dystrophy
4 genes
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4 of 4 corroborated by 2+ sources
PRPH2(5), CTNNA1(5), OTX2(3), MAPKAPK3(3)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. —
Paroxysmal dyskinesia Paroxysmal dystonic choreoathetosis
4 genes
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3 of 4 corroborated by 2+ sources
SLC2A1(1), KCNJ10(2), PRRT2(2), KCNA1(2)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. Cluster 58 →
Glycinuria with/without oxalate urolithiasis Iminoglycinuria
4 genes
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3 of 4 corroborated by 2+ sources
SLC36A1(1), SLC36A2(6), SLC6A19(2), SLC6A20(3)
0.667 1.000 2.14e-15 3.12e-14 ✓ sig. —
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency Cytochrome c oxidase deficiency
5 genes
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5 of 5 corroborated by 2+ sources
SCO2(5), COA5(5), COA6(5), COX15(5), SURF1(2)
0.238 1.000 2.15e-15 3.14e-14 ✓ sig. Cluster 50 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.