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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Anemia Polycythemia
12 genes
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7 of 12 corroborated by 2+ sources
HBA1(2), ACE(1), H2BC4(1), HFE(1), EPO(3), EPOR(2), GH1(2), HBB(3), HK1(2), JAK2(3), PRKCE(1), TMPRSS6(1)
0.130 0.632 1.50e-23 3.36e-22 ✓ sig. Cluster 105 →
Bladder calculus Ureterolithiasis
9 genes
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ALPL(1), BCAS3(1), PDILT(1), ABCG2(1), RGS14(1), BCAS1(1), CYP24A1(1), KLK15(1), RSPH14(1)
0.220 0.900 1.58e-23 3.55e-22 ✓ sig. Cluster 178 →
Anophthalmia/microphthalmia-esophageal atresia syndrome Microphthalmia
11 genes
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10 of 11 corroborated by 2+ sources
BMP4(6), PAX6(3), SOX2(5), STRA6(3), SIX6(4), C14orf39(1), OTX2(4), PORCN(3), RAX(4), VAX1(4), VSX2(6)
0.208 0.440 1.82e-23 4.08e-22 ✓ sig. Cluster 56 →
Congenital muscular dystrophy Muscle eye brain disease
9 genes
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9 of 9 corroborated by 2+ sources
GMPPB(3), LARGE1(2), CRPPA(3), POMT1(3), POMT2(3), POMGNT1(4), FKRP(4), FKTN(4), POMK(2)
0.310 0.600 1.85e-23 4.15e-22 ✓ sig. Cluster 14 →
Brugada syndrome Conduction disorder of the heart
12 genes
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7 of 12 corroborated by 2+ sources
PKP2(4), TRPM4(4), TTR(1), DSP(1), CACNA1C(7), KCNH2(3), KCNQ1(1), RYR2(1), SCN5A(8), TTN(1), ANK2(3), SCN1B(6)
0.158 0.500 1.88e-23 4.21e-22 ✓ sig. Cluster 4 →
Melas syndrome Rod-cone dystrophy
10 genes
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5 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.238 0.556 1.95e-23 4.35e-22 ✓ sig. Cluster 32 →
Dyskeratosis congenita Hoyeraal hreidarsson syndrome
8 genes
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7 of 8 corroborated by 2+ sources
ACD(6), RTEL1(6), TERT(8), PARN(6), POT1(1), DKC1(8), TINF2(7), DCLRE1B(4)
0.296 1.000 2.00e-23 4.46e-22 ✓ sig. Cluster 64 →
Psoriasis vulgaris Psoriatic arthritis
15 genes
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4 of 15 corroborated by 2+ sources
IFIH1(1), HLA-C(2), TNIP1(1), RUNX3(1), TRAF3IP2(3), FAP(1), HLA-B(1), IL23R(1), MUC22(1), NOS2(3), TNFAIP3(1), TYK2(1) +3 more
0.133 0.278 2.23e-23 4.96e-22 ✓ sig. —
Ectrodactyly Split hand-foot malformation
7 genes
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6 of 7 corroborated by 2+ sources
TP63(7), DLX5(7), MAP3K20(6), EPS15L1(2), DLX6(1), WNT10B(5), FBXW4(2)
0.583 0.875 2.36e-23 5.26e-22 ✓ sig. —
Kidney failure Nonalcoholic fatty liver disease
39 genes
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38 of 39 corroborated by 2+ sources
INS(2), CAT(2), SERPINA1(3), ACE(2), APOE(2), ATP5F1B(2), CYP1A2(3), MLXIPL(3), SCARB1(2), SREBF1(2), VEGFA(2), GSTP1(2) +27 more
0.074 0.155 2.61e-23 5.82e-22 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia Wolff-parkinson-white syndrome
11 genes
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4 of 11 corroborated by 2+ sources
TRPM4(1), DSP(1), KCNJ2(3), CASQ2(7), KCNH2(1), LMNA(1), RYR2(7), SCN5A(1), MYBPC3(1), ANK2(3), LAMA4(1)
0.180 0.550 2.72e-23 6.04e-22 ✓ sig. Cluster 4 →
Lymphocytic leukemia Lymphoid leukemia
14 genes
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TERT(1), GRAMD1B(1), FAS(1), HLA-DQB1(1), EXOC2(1), IRF4(1), SP140(1), IRF8(1), ACOXL(1), DMRTA1(1), PALD1(1), MYNN(1) +2 more
0.108 0.500 2.73e-23 6.06e-22 ✓ sig. Cluster 225 →
Arteriosclerosis Ischemic heart disease
17 genes
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3 of 17 corroborated by 2+ sources
ABCG8(1), APOB(1), APOE(2), LDLR(1), MMP12(1), MMP3(1), NOS3(2), ESR1(1), IL10(1), PON1(1), TLR4(1), PTGS2(1) +5 more
0.087 0.415 2.87e-23 6.36e-22 ✓ sig. —
Endometriosis Migraine
52 genes
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11 of 52 corroborated by 2+ sources
ETV6(1), RUNX1(1), ASCC1(1), CACNA1A(6), CAMK1D(1), ERBB4(1), ETV1(1), FOXP1(1), LRP1B(1), MAP2K5(1), NRP1(3), PTPRD(1) +40 more
0.071 0.138 3.13e-23 6.94e-22 ✓ sig. Cluster 78 →
Focal segmental glomerulosclerosis Genetic steroid-resistant nephrotic syndrome
11 genes
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9 of 11 corroborated by 2+ sources
NUP107(1), ACTN4(3), ARHGAP24(1), CD2AP(5), FAT1(3), MYO1E(4), PAX2(4), TRPC6(5), ANLN(4), CRB2(5), INF2(5)
0.208 0.379 3.35e-23 7.42e-22 ✓ sig. Cluster 30 →
Focal segmental glomerulosclerosis Hereditary steroid-resistant nephrotic syndrome
11 genes
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11 of 11 corroborated by 2+ sources
NUP107(2), ACTN4(4), ARHGAP24(2), CD2AP(6), MYO1E(5), PAX2(5), TRPC6(6), APOL1(4), ANLN(5), CRB2(6), INF2(6)
0.208 0.379 3.35e-23 7.42e-22 ✓ sig. Cluster 30 →
Aortic aneurysm Congenital aneurysm of ascending aorta
10 genes
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7 of 10 corroborated by 2+ sources
FBN1(3), SMAD3(2), FOXE3(4), COL3A1(1), MYH11(5), NDE1(1), TGFBR2(2), LOX(5), SRFBP1(1), MYLK(4)
0.154 0.833 3.43e-23 7.57e-22 ✓ sig. Cluster 12 →
Inflammatory bowel disease Obstructive pulmonary disease
84 genes
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5 of 84 corroborated by 2+ sources
WWOX(1), ATP2A2(1), AFF3(1), ASCC2(1), ATP8B4(1), BSN(1), DCBLD1(1), EMSY(1), ERBB3(1), FADS1(1), FADS2(1), FOXP2(1) +72 more
0.072 0.150 3.87e-23 8.55e-22 ✓ sig. —
Age-related macular degeneration Glaucoma
23 genes
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9 of 23 corroborated by 2+ sources
CFI(4), ABCA1(1), ALDH1A2(1), APOE(3), TNXB(1), C2(3), C3(3), MTHFR(1), PON1(1), RAD51B(1), CFB(3), TGFBR1(1) +11 more
0.078 0.277 4.17e-23 9.19e-22 ✓ sig. —
Congenital deformity of clavicle Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of elbow Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of forearm Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of scapula Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of wrist Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Febrile convulsion Generalized epilepsy with febrile seizures plus
9 genes
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9 of 9 corroborated by 2+ sources
CPA6(6), HCN1(7), GABRG2(6), ADGRV1(6), SCN1A(8), SCN1B(7), SCN2A(2), SCN9A(2), STX1B(7)
0.300 0.563 4.23e-23 9.26e-22 ✓ sig. Cluster 47 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.