Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 22
24
Diseases
334
Unique genes
0.115
Avg. similarity score
Hyperkinesia
Most-connected disease (9 links)
Disease
Searched: Neurodevelopmental disorder with language delay and variable cognitive abnormalities
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Neurodevelopmental disorder with language delay and variable cognitive abnormalities
Hyperkinesia
Chiari-frommel syndrome
Disruptive impulse-control and conduct disorder
Dyskinesia, drug-induced
Hypotension
Bradycardia
Hyperproinsulinemia
Myoclonic dystonia
Catalepsy
Pituitary neoplasms
Amphetamine or sympathomimetic abuse
Delirium
Dyskinesia
Amnesia
Hypogonadotropic hypogonadism 23 with or without anosmia
Anhedonia
Edema
Hyperalgesia
Intellectual developmental disorder, autosomal dominant 67
Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
Neurodevelopmental disorder with language impairment and behavioral abnormalities
Retrograde amnesia
Substance-induced psychosis
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Hyperkinesia | 9 | 9 | 33 |
| Chiari-frommel syndrome | 7 | 7 | 7 |
| Disruptive impulse-control and conduct disorder | 7 | 7 | 5 |
| Dyskinesia, drug-induced | 7 | 7 | 15 |
| Hypotension | 7 | 7 | 67 |
| Bradycardia | 6 | 6 | 26 |
| Hyperproinsulinemia | 6 | 6 | 9 |
| Myoclonic dystonia | 6 | 6 | 5 |
| Catalepsy | 5 | 5 | 16 |
| Pituitary neoplasms | 5 | 5 | 7 |
| Amphetamine or sympathomimetic abuse | 4 | 4 | 77 |
| Delirium | 4 | 4 | 10 |
| Dyskinesia | 4 | 4 | 26 |
| Amnesia | 3 | 3 | 18 |
| Hypogonadotropic hypogonadism 23 with or without anosmia | 3 | 3 | 1 |
| Anhedonia | 2 | 2 | 26 |
| Edema | 2 | 2 | 49 |
| Hyperalgesia | 2 | 2 | 89 |
| Intellectual developmental disorder, autosomal dominant 67 | 2 | 2 | 1 |
| Neurodevelopmental disorder with language delay and variable cognitive abnormalities | 2 | 2 | 1 |
| Neurodevelopmental disorder with or without variable movement or behavioral abnormalities | 2 | 2 | 1 |
| Neurodevelopmental disorder with language impairment and behavioral abnormalities | 1 | 1 | 1 |
| Retrograde amnesia | 1 | 1 | 1 |
| Substance-induced psychosis | 1 | 1 | 17 |
Top shared genes (genes linked to 2+ member diseases)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| DRD2 | 14 / 24 | Amphetamine or sympathomimetic abuse, Anhedonia, Bradycardia, Catalepsy and 10 more |
| PDYN | 7 / 24 | Amnesia, Amphetamine or sympathomimetic abuse, Bradycardia, Dyskinesia and 3 more |
| PRL | 7 / 24 | Bradycardia, Catalepsy, Chiari-frommel syndrome, Disruptive impulse-control and conduct disorder and 3 more |
| DRD3 | 6 / 24 | Amphetamine or sympathomimetic abuse, Delirium, Disruptive impulse-control and conduct disorder, Dyskinesia, drug-induced and 2 more |
| DRD1 | 5 / 24 | Amphetamine or sympathomimetic abuse, Catalepsy, Dyskinesia, drug-induced, Hyperkinesia and 1 more |
| IL6 | 5 / 24 | Amnesia, Delirium, Edema, Hyperalgesia and 1 more |
| POMC | 5 / 24 | Amnesia, Bradycardia, Catalepsy, Edema and 1 more |
| SLC6A3 | 5 / 24 | Amphetamine or sympathomimetic abuse, Anhedonia, Delirium, Hyperkinesia and 1 more |
| TAC1 | 5 / 24 | Amnesia, Bradycardia, Edema, Hyperalgesia and 1 more |
| ADORA2A | 4 / 24 | Amphetamine or sympathomimetic abuse, Hyperkinesia, Hypotension, Substance-induced psychosis |
| AGT | 4 / 24 | Bradycardia, Catalepsy, Hyperalgesia, Hypotension |
| CALCA | 4 / 24 | Catalepsy, Edema, Hyperalgesia, Hyperkinesia |
| COMT | 4 / 24 | Amphetamine or sympathomimetic abuse, Anhedonia, Dyskinesia, Hyperalgesia |
| GAD1 | 4 / 24 | Amphetamine or sympathomimetic abuse, Chiari-frommel syndrome, Dyskinesia, drug-induced, Hyperproinsulinemia |
| GCG | 4 / 24 | Bradycardia, Catalepsy, Hyperkinesia, Hypotension |
| KCNN2 | 4 / 24 | Dyskinesia, Edema, Myoclonic dystonia, Neurodevelopmental disorder with or without variable movement or behavioral abnormalities |
| KNG1 | 4 / 24 | Bradycardia, Edema, Hyperalgesia, Hypotension |
| LHB | 4 / 24 | Bradycardia, Chiari-frommel syndrome, Hyperproinsulinemia, Hypogonadotropic hypogonadism 23 with or without anosmia |
| OPRM1 | 4 / 24 | Amphetamine or sympathomimetic abuse, Dyskinesia, Hyperalgesia, Substance-induced psychosis |
| TH | 4 / 24 | Catalepsy, Delirium, Dyskinesia, drug-induced, Hyperkinesia |
| ADORA1 | 3 / 24 | Bradycardia, Catalepsy, Hypotension |
| AVP | 3 / 24 | Amnesia, Hyperalgesia, Hypotension |
| CAT | 3 / 24 | Dyskinesia, drug-induced, Edema, Hypotension |
| CCK | 3 / 24 | Catalepsy, Dyskinesia, drug-induced, Hyperkinesia |
| CNR1 | 3 / 24 | Catalepsy, Hyperalgesia, Hypotension |
| CRH | 3 / 24 | Anhedonia, Bradycardia, Hypotension |
| CRHR1 | 3 / 24 | Anhedonia, Hyperalgesia, Hyperkinesia |
| CXCL8 | 3 / 24 | Delirium, Edema, Hyperalgesia |
| EDN1 | 3 / 24 | Bradycardia, Hyperalgesia, Hypotension |
| FOS | 3 / 24 | Amphetamine or sympathomimetic abuse, Hyperalgesia, Hyperkinesia |
| GABBR1 | 3 / 24 | Amphetamine or sympathomimetic abuse, Hyperkinesia, Neurodevelopmental disorder with language delay and variable cognitive abnormalities |
| GDNF | 3 / 24 | Amphetamine or sympathomimetic abuse, Dyskinesia, drug-induced, Hyperalgesia |
| GNRH1 | 3 / 24 | Bradycardia, Chiari-frommel syndrome, Hyperproinsulinemia |
| GRIA1 | 3 / 24 | Hyperkinesia, Hypotension, Intellectual developmental disorder, autosomal dominant 67 |
| HTR1A | 3 / 24 | Anhedonia, Bradycardia, Substance-induced psychosis |
| HTR2A | 3 / 24 | Dyskinesia, Hyperalgesia, Hyperkinesia |
| IGF1 | 3 / 24 | Delirium, Hyperalgesia, Pituitary neoplasms |
| IL1A | 3 / 24 | Amnesia, Hyperalgesia, Hypotension |
| IL2 | 3 / 24 | Amnesia, Hyperkinesia, Hypotension |
| INS | 3 / 24 | Edema, Hyperproinsulinemia, Hypotension |
| NGF | 3 / 24 | Amnesia, Hyperalgesia, Hyperkinesia |
| NTS | 3 / 24 | Bradycardia, Catalepsy, Hyperkinesia |
| OXT | 3 / 24 | Edema, Hyperkinesia, Hypotension |
| TNF | 3 / 24 | Edema, Hyperalgesia, Hypotension |
| TRH | 3 / 24 | Amnesia, Bradycardia, Catalepsy |
| VIP | 3 / 24 | Edema, Hyperalgesia, Hypotension |
| ACE | 2 / 24 | Hypotension, Substance-induced psychosis |
| AKT1 | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| APOE | 2 / 24 | Amnesia, Delirium |
| ATP1A3 | 2 / 24 | Anhedonia, Dyskinesia |
| BDKRB2 | 2 / 24 | Hyperalgesia, Hypotension |
| CACNA1D | 2 / 24 | Bradycardia, Edema |
| CNR2 | 2 / 24 | Catalepsy, Hyperalgesia |
| CYP2D6 | 2 / 24 | Amphetamine or sympathomimetic abuse, Bradycardia |
| DISC1 | 2 / 24 | Anhedonia, Hyperkinesia |
| EDN2 | 2 / 24 | Bradycardia, Hypotension |
| EDN3 | 2 / 24 | Bradycardia, Hypotension |
| FOSB | 2 / 24 | Disruptive impulse-control and conduct disorder, Dyskinesia, drug-induced |
| GJA1 | 2 / 24 | Anhedonia, Hyperalgesia |
| GRIA2 | 2 / 24 | Hyperkinesia, Neurodevelopmental disorder with language impairment and behavioral abnormalities |
| GRIN2B | 2 / 24 | Hyperalgesia, Hypotension |
| GRM2 | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| GSTP1 | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| HTR1B | 2 / 24 | Amphetamine or sympathomimetic abuse, Hypotension |
| HTR6 | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| IL1B | 2 / 24 | Hyperalgesia, Hypotension |
| IL1RN | 2 / 24 | Delirium, Hyperalgesia |
| MAPK1 | 2 / 24 | Anhedonia, Hyperalgesia |
| NISCH | 2 / 24 | Bradycardia, Hypotension |
| NOS1 | 2 / 24 | Amphetamine or sympathomimetic abuse, Hyperalgesia |
| NPY1R | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| PGR | 2 / 24 | Chiari-frommel syndrome, Hyperproinsulinemia |
| PICK1 | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| PLAT | 2 / 24 | Amphetamine or sympathomimetic abuse, Hypotension |
| PNOC | 2 / 24 | Hyperalgesia, Hypotension |
| PPP1R1B | 2 / 24 | Catalepsy, Dyskinesia |
| PREP | 2 / 24 | Amnesia, Retrograde amnesia |
| PRLR | 2 / 24 | Chiari-frommel syndrome, Hyperproinsulinemia |
| PTGS2 | 2 / 24 | Edema, Hyperalgesia |
| PTHLH | 2 / 24 | Edema, Hyperalgesia |
| RGS9 | 2 / 24 | Dyskinesia, drug-induced, Substance-induced psychosis |
| SLC6A4 | 2 / 24 | Amphetamine or sympathomimetic abuse, Anhedonia |
| SLC9A3 | 2 / 24 | Edema, Hypotension |
| SNCA | 2 / 24 | Amphetamine or sympathomimetic abuse, Substance-induced psychosis |
| TACR1 | 2 / 24 | Bradycardia, Hyperalgesia |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Neuroactive ligand-receptor interaction | KEGG | 76 / 370 | 7.4× | 2.31e-45 | 2.27e-41 ✓ sig. |
| cAMP signaling pathway | KEGG | 54 / 226 | 8.6× | 1.21e-35 | 6.45e-32 ✓ sig. |
| Hormone signaling | KEGG | 52 / 219 | 8.5× | 3.55e-34 | 1.51e-30 ✓ sig. |
| Peptide ligand-binding receptors | Reactome | 34 / 106 | 11.5× | 2.50e-27 | 5.87e-24 ✓ sig. |
| Serotonergic synapse | KEGG | 28 / 115 | 8.8× | 4.56e-19 | 2.96e-16 ✓ sig. |
| Dopaminergic synapse | KEGG | 29 / 132 | 7.9× | 2.20e-18 | 1.27e-15 ✓ sig. |
| G alpha (i) signalling events | Reactome | 38 / 249 | 5.5× | 5.61e-18 | 3.04e-15 ✓ sig. |
| G alpha (q) signalling events | Reactome | 32 / 172 | 6.7× | 6.84e-18 | 3.57e-15 ✓ sig. |
| Cocaine addiction | KEGG | 19 / 49 | 13.9× | 1.46e-17 | 7.32e-15 ✓ sig. |
| Chagas disease | KEGG | 25 / 103 | 8.7× | 4.12e-17 | 1.87e-14 ✓ sig. |
| Circadian entrainment | KEGG | 23 / 97 | 8.5× | 1.35e-15 | 4.57e-13 ✓ sig. |
| Calcium signaling pathway | KEGG | 35 / 254 | 5.0× | 3.18e-15 | 1.01e-12 ✓ sig. |
| Inflammatory mediator regulation of TRP channels | KEGG | 22 / 99 | 8.0× | 2.44e-14 | 6.46e-12 ✓ sig. |
| AGE-RAGE signaling pathway in diabetic complications | KEGG | 22 / 101 | 7.8× | 3.80e-14 | 9.74e-12 ✓ sig. |
| Amphetamine addiction | KEGG | 18 / 69 | 9.4× | 2.99e-13 | 6.24e-11 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| chemical synaptic transmission | GO:0007268 | 44 / 236 | 10.4× | 4.71e-32 | 3.20e-28 ✓ sig. |
| signal transduction | GO:0007165 | 108 / 2,125 | 2.8× | 5.00e-25 | 1.56e-21 ✓ sig. |
| G protein-coupled receptor signaling pathway | GO:0007186 | 69 / 1,031 | 3.7× | 6.24e-22 | 1.33e-18 ✓ sig. |
| response to xenobiotic stimulus | GO:0009410 | 35 / 248 | 7.9× | 1.90e-21 | 3.82e-18 ✓ sig. |
| response to ethanol | GO:0045471 | 25 / 110 | 12.7× | 7.58e-21 | 1.39e-17 ✓ sig. |
| sensory perception of pain | GO:0019233 | 18 / 44 | 22.9× | 1.48e-20 | 2.55e-17 ✓ sig. |
| positive regulation of cytosolic calcium ion concentration | GO:0007204 | 26 / 137 | 10.6× | 1.61e-19 | 2.39e-16 ✓ sig. |
| vasodilation | GO:0042311 | 18 / 50 | 20.1× | 2.36e-19 | 3.43e-16 ✓ sig. |
| response to lipopolysaccharide | GO:0032496 | 27 / 161 | 9.4× | 9.12e-19 | 1.21e-15 ✓ sig. |
| G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger | GO:0007187 | 18 / 54 | 18.6× | 1.19e-18 | 1.55e-15 ✓ sig. |
| neuropeptide signaling pathway | GO:0007218 | 23 / 111 | 11.6× | 2.63e-18 | 3.26e-15 ✓ sig. |
| response to hypoxia | GO:0001666 | 27 / 176 | 8.6× | 9.78e-18 | 1.14e-14 ✓ sig. |
| regulation of blood pressure | GO:0008217 | 20 / 83 | 13.5× | 1.85e-17 | 2.07e-14 ✓ sig. |
| response to cocaine | GO:0042220 | 14 / 35 | 22.4× | 4.28e-16 | 3.70e-13 ✓ sig. |
| behavioral response to cocaine | GO:0048148 | 11 / 17 | 36.2× | 5.68e-16 | 4.85e-13 ✓ sig. |