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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bilirubin metabolism disease Perinatal disease
8 genes
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UGT1A10(1), UGT1A8(1), UGT1A9(1), UGT1A6(1), UGT1A3(1), UGT1A4(1), UGT1A5(1), UGT1A7(1)
0.533 0.800 2.85e-25 7.07e-24 ✓ sig. Cluster 260 →
Cholecystitis Cholecystolithiasis
12 genes
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1 of 12 corroborated by 2+ sources
ABCG8(2), CRBN(1), SUMF1(1), TMEM132C(1), GPC1(1), KCNJ6(1), ADAM19(1), KDM4C(1), DYRK1A(1), EHF(1), FHIP2B(1), LARP1(1)
0.084 1.000 2.36e-25 5.86e-24 ✓ sig. Cluster 237 →
Bonnevie-ullrich syndrome Turner syndrome
7 genes
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5 of 7 corroborated by 2+ sources
CAT(2), IGFBP3(1), SOD2(2), SOD1(2), VDR(1), GH1(2), NOS2(2)
0.778 1.000 1.97e-25 4.90e-24 ✓ sig. Cluster 285 →
Fahr's disease Primary familial brain calcification
7 genes
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7 of 7 corroborated by 2+ sources
PDGFRB(4), XPR1(4), PDGFB(4), JAM2(4), SLC20A2(3), MYORG(4), NAA60(2)
0.778 1.000 1.97e-25 4.90e-24 ✓ sig. Cluster 390 →
Cerebellar ataxia Neuropathy, ataxia, and retinitis pigmentosa
12 genes
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1 of 12 corroborated by 2+ sources
ND1(1), ND2(1), ATP6(2), COX3(1), TDP1(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.103 0.923 1.93e-25 4.82e-24 ✓ sig. —
Colorectal adenoma Neoplasms
18 genes
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TERT(1), NXN(1), RHPN2(1), COL4A2(1), MYRF(1), TMEM258(1), LAMC1(1), SMAD6(1), SMAD7(1), CCND2(1), HHIP(1), EIF3H(1) +6 more
0.107 0.383 1.86e-25 4.66e-24 ✓ sig. Cluster 20 →
Kidney disease Nephrotic syndrome
39 genes
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22 of 39 corroborated by 2+ sources
WT1(4), COL4A5(1), ATIC(1), COL4A3(1), COL4A4(1), ALMS1(1), ACTN4(1), AGT(2), LAMB2(3), REN(2), TRPC6(1), EPO(2) +27 more
0.071 0.235 1.70e-25 4.24e-24 ✓ sig. —
Pelvic organ prolapse Uterine prolapse
13 genes
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WT1(1), FBN2(1), SORBS2(1), EFEMP1(1), PNPT1(1), GDF7(1), MAFF(1), PLA2G6(1), POLD3(1), HNRNPA1L3(1), WNT4(1), SLC12A2(1) +1 more
0.092 0.867 1.54e-25 3.86e-24 ✓ sig. Cluster 146 →
Colorectal neoplasms Ovarian neoplasms
31 genes
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TP53(1), TP63(1), ATP7B(1), EGFR(1), EPCAM(1), MSH2(1), YAP1(1), SOD2(1), TLR4(1), AKT1(1), CTNNB1(1), DLC1(1) +19 more
0.079 0.237 1.54e-25 3.85e-24 ✓ sig. Cluster 5 →
Congenital ichthyosiform erythroderma Congenital ichthyosis
8 genes
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8 of 8 corroborated by 2+ sources
TGM1(3), SDR9C7(3), ABCA12(5), ALOX12B(3), ALOXE3(3), PNPLA1(3), NIPAL4(3), CERS3(3)
0.533 0.889 1.48e-25 3.72e-24 ✓ sig. Cluster 233 →
Diabetic retinopathy Ischemic heart disease
28 genes
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7 of 28 corroborated by 2+ sources
ACE(1), APOB(1), APOE(2), SERPINE1(1), VEGFA(2), NOS3(1), ADRB3(1), AGER(1), AGTR1(2), EPO(1), GSTT1(1), IL10(1) +16 more
0.091 0.171 1.35e-25 3.39e-24 ✓ sig. —
Mood disorder Post-traumatic stress disorder
37 genes
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8 of 37 corroborated by 2+ sources
KANSL1(1), BLTP1(1), ADCY8(3), ANK3(1), ARHGAP15(1), CACNA1E(1), CSE1L(1), DCC(1), FOXP2(1), GABBR1(1), GRM8(1), KAZN(1) +25 more
0.080 0.182 1.34e-25 3.38e-24 ✓ sig. Cluster 2 →
Retinitis pigmentosa-deafness syndrome Usher syndrome
10 genes
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8 of 10 corroborated by 2+ sources
PCDH15(7), USH2A(7), HARS1(7), PSAP(1), CDH23(8), MYO7A(7), WHRN(6), CLRN1(7), USH1G(7), C10orf105(1)
0.217 0.909 1.32e-25 3.33e-24 ✓ sig. —
Color vision deficiency Schizophrenia
285 genes
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115 of 285 corroborated by 2+ sources
SOX5(2), HMGA2(1), TBX1(2), CUL9(1), WWOX(2), LMBR1(1), PDE4D(2), ZSWIM6(1), PIK3R1(1), DOCK6(1), RBPJ(1), CACNA1D(1) +273 more
0.088 0.295 1.32e-25 3.33e-24 ✓ sig. Cluster 2 →
Colorectal neoplasms Urinary bladder neoplasms
32 genes
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FGFR3(1), TP53(1), ARID1A(1), EGFR(1), ERCC2(1), ESR2(1), SRC(1), ACHE(1), BCL2(1), IGFBP3(1), MTHFR(1), PON1(1) +20 more
0.080 0.225 1.29e-25 3.26e-24 ✓ sig. Cluster 5 →
Connective tissue disease Marfan syndrome
17 genes
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14 of 17 corroborated by 2+ sources
COL2A1(1), FBN1(7), NOTCH1(3), COL5A1(2), FBN2(2), PRKG1(2), FLNA(1), SMAD3(2), ACTA2(3), COL1A1(2), COL3A1(2), MYH11(2) +5 more
0.118 0.395 1.00e-25 2.53e-24 ✓ sig. Cluster 12 →
Lung disease Pulmonary fibrosis
21 genes
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16 of 21 corroborated by 2+ sources
CAT(2), SERPINA1(3), ACE(2), SERPINE1(1), IL1A(1), IL1B(2), NFE2L2(2), TNF(2), PTGS2(2), PDGFA(2), TGFB1(2), CSF3(2) +9 more
0.112 0.208 9.96e-26 2.52e-24 ✓ sig. Cluster 119 →
Atrophic macular degeneration Macular degeneration
16 genes
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10 of 16 corroborated by 2+ sources
CFI(3), APOE(3), C2(3), C3(3), RAD51B(1), CFB(3), CETP(1), CFH(3), HERPUD1(1), RDH5(1), ARMS2(3), C9(3) +4 more
0.148 0.286 8.72e-26 2.21e-24 ✓ sig. Cluster 187 →
Melas syndrome Postaxial polydactyly
10 genes
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5 of 10 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), COX2(2), ND3(1), ND4(1)
0.333 0.556 7.46e-26 1.89e-24 ✓ sig. Cluster 32 →
Congenital ichthyosis Ichthyosis
9 genes
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9 of 9 corroborated by 2+ sources
TGM1(3), KRT1(2), ABCA12(4), ALOX12B(3), ALOXE3(3), CYP4F22(3), PNPLA1(3), ST14(3), CERS3(3)
0.429 0.692 6.10e-26 1.55e-24 ✓ sig. Cluster 233 →
Maturity-onset diabetes of the young (mody) monogenic diabetes
9 genes
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9 of 9 corroborated by 2+ sources
INS(6), RFX6(2), ABCC8(4), HNF4A(6), KCNJ11(7), GCK(7), HNF1A(6), PDX1(7), NEUROD1(6)
0.360 0.900 6.10e-26 1.55e-24 ✓ sig. Cluster 36 →
Lewy body disease Parkinson disease
34 genes
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21 of 34 corroborated by 2+ sources
KANSL1(1), INS(2), MCCC1(1), GFAP(2), APOE(1), ELOVL7(1), IGF2(2), KRTCAP2(1), NTRK2(3), PTPRD(1), IGF1R(2), IGF2R(2) +22 more
0.058 0.358 5.81e-26 1.48e-24 ✓ sig. —
Intellectual developmental disorder, x-linked Partington syndrome
12 genes
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12 of 12 corroborated by 2+ sources
CASK(2), ARX(6), AP1S2(2), RPL10(4), BRWD3(5), LAS1L(2), KDM5C(3), NONO(3), DDX3X(5), PAK3(4), USP9X(5), STEEP1(5)
0.130 0.857 5.80e-26 1.48e-24 ✓ sig. —
Benign pemphigus Rothmund-thomson syndrome
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.571 0.889 5.69e-26 1.45e-24 ✓ sig. Cluster 80 →
Darier disease Rothmund-thomson syndrome
8 genes
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ALDH18A1(1), ATP6V0A2(1), ELN(1), EFEMP2(1), FBLN5(1), ATP6V1A(1), ATP6V1E1(1), PYCR1(1)
0.571 0.889 5.69e-26 1.45e-24 ✓ sig. Cluster 80 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.