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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hereditary sensory and autonomic neuropathy Sensory neuropathy
8 genes
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7 of 8 corroborated by 2+ sources
NTRK1(4), NGF(5), DNMT1(3), FLVCR1(1), WNK1(7), KIF1A(6), SCN11A(6), RETREG1(7)
0.320 0.615 1.24e-21 2.55e-20 ✓ sig. Cluster 169 →
Eye disease Glaucoma
23 genes
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6 of 23 corroborated by 2+ sources
ABCA1(1), ANTXR1(1), CADM2(1), HERC2(1), ME3(1), PDZD2(1), PTCD2(1), RARB(1), RBFOX1(1), TCF7L2(1), RPE65(3), EFEMP1(6) +11 more
0.075 0.245 9.72e-22 2.00e-20 ✓ sig. —
Kidney disease Myocardial infarction
64 genes
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33 of 64 corroborated by 2+ sources
APOA1(1), SPI1(1), COL4A4(2), ACE(2), AGT(2), BCAS3(1), CLU(2), COL6A3(2), CUX2(1), L3MBTL3(1), LAMB2(2), NYAP2(1) +52 more
0.068 0.151 9.05e-22 1.86e-20 ✓ sig. —
Gastric ulcer Peptic ulcer disease
16 genes
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1 of 16 corroborated by 2+ sources
CCKBR(1), FUT2(1), MECOM(1), PRKAA1(1), TTC33(1), IL1B(2), ABO(1), JRK(1), PSCA(1), PLCL2(1), MUC1(1), LY6K(1) +4 more
0.101 0.302 8.83e-22 1.82e-20 ✓ sig. —
Cerebellar ataxia Cleft palate and bilateral cleft lip
11 genes
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ND1(1), ND2(1), ATP6(1), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.093 0.786 7.98e-22 1.65e-20 ✓ sig. —
Cutis laxa Rothmund-thomson syndrome
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.320 0.667 7.95e-22 1.64e-20 ✓ sig. Cluster 80 →
Benign hereditary chorea Chorea
7 genes
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4 of 7 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), HLA-DQB1(1), CACNA2D2(2), ADCY5(2), NKX2-1(5), VPS13A(3)
0.368 1.000 7.83e-22 1.62e-20 ✓ sig. Cluster 1 →
Congenital nasopharyngeal atresia Polynesian bronchiectasis
8 genes
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DNAH5(1), CCDC40(1), DNAH11(1), DNAI1(1), DNAAF3(1), DNAAF19(1), DNAAF4(1), DRC1(1)
0.250 0.889 6.72e-22 1.39e-20 ✓ sig. Cluster 9 →
Joubert syndrome Orofaciodigital syndrome
12 genes
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11 of 12 corroborated by 2+ sources
KIF7(3), CPLANE1(8), TMEM216(6), TMEM231(5), IFT140(1), KIAA0753(6), TBC1D32(4), OFD1(6), TCTN3(6), TMEM107(4), FAM149B1(4), PDE6D(5)
0.152 0.375 5.16e-22 1.07e-20 ✓ sig. Cluster 8 →
Melas syndrome Mitochondrial complex deficiency
12 genes
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7 of 12 corroborated by 2+ sources
ND1(2), ND2(1), ATP6(1), COX3(2), ATP8(1), COX1(2), ND5(2), NDUFS1(5), COX2(2), ND3(1), ND4(1), CYTB(2)
0.095 0.667 4.59e-22 9.51e-21 ✓ sig. —
Heart disease Large artery stroke
19 genes
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ABCG8(1), HDAC9(1), IL6R(1), JCAD(1), SMARCA4(1), ATXN2(1), ABO(1), CELSR2(1), LPA(1), PSRC1(1), ZPR1(1), PLG(1) +7 more
0.092 0.244 4.56e-22 9.46e-21 ✓ sig. Cluster 139 →
Cushing syndrome Cushing's disease
8 genes
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8 of 8 corroborated by 2+ sources
TP53(2), ATRX(2), BRAF(2), USP8(2), POMC(2), USP48(2), NR3C1(2), CDH23(2)
0.320 0.727 4.28e-22 8.89e-21 ✓ sig. —
Congenital thyroid atrophy Thyroid agenesis
6 genes
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TSHR(1), NKX2-5(1), THRA(1), PAX8(1), TSHB(1), IGSF1(1)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. Cluster 88 →
Berardinelli-seip congenital lipodystrophy Generalized lipodystrophy
6 genes
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5 of 6 corroborated by 2+ sources
PPARG(1), FOS(2), CAV1(2), BSCL2(2), CAVIN1(2), AGPAT2(2)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. Cluster 71 →
Congenital glaucoma Hydrophthalmos
6 genes
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6 of 6 corroborated by 2+ sources
TCF7L2(2), CYP1B1(2), TEK(3), MYOC(3), GPATCH3(2), LTBP2(3)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. —
Congenital hypothyroidism without goiter Thyroid agenesis
6 genes
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TSHR(1), NKX2-5(1), THRA(1), PAX8(1), TSHB(1), IGSF1(1)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. Cluster 88 →
Diabetes mellitus ketosis prone Idiopathic diabetes
6 genes
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INS(1), CTLA4(1), IL2RA(1), CCR5(1), HNF1A(1), SUMO4(1)
0.750 1.000 3.79e-22 7.87e-21 ✓ sig. —
Myocardial ischemia Nonalcoholic fatty liver disease
46 genes
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40 of 46 corroborated by 2+ sources
CDH2(3), SERPINA1(3), ACE(2), APOC1(1), APOE(2), BTNL2(2), JCAD(2), LDLR(3), MLXIPL(2), NYAP2(1), PTPRD(2), SCARB1(3) +34 more
0.069 0.146 3.73e-22 7.79e-21 ✓ sig. —
Colonic neoplasms Pancreatic neoplasms
24 genes
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3 of 24 corroborated by 2+ sources
WT1(1), HNF1B(1), DPYD(1), TP53(1), EGFR(1), MECOM(2), PPARG(1), SOD2(1), STAT3(1), TNF(1), PTGS2(1), CTNNB1(1) +12 more
0.081 0.205 3.65e-22 7.63e-21 ✓ sig. Cluster 5 →
Tetralogy of fallot Ventricular septal defect
15 genes
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15 of 15 corroborated by 2+ sources
TBX1(5), GATA4(6), BRAF(2), FBN2(2), NKX2-6(3), SMARCA4(2), TBX5(2), FLNA(2), GATA5(4), TBX20(2), NKX2-5(6), CITED2(6) +3 more
0.106 0.357 3.55e-22 7.42e-21 ✓ sig. —
Ciliary dyskinesia Ciliary dyskinesia, with or without situs inversus
10 genes
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10 of 10 corroborated by 2+ sources
DNAH5(7), CCDC40(6), DNAH11(7), DNAI1(5), RSPH4A(7), DNAAF3(6), DNAAF19(7), DNAAF4(7), DRC1(6), ODAD3(7)
0.109 0.909 3.04e-22 6.38e-21 ✓ sig. Cluster 9 →
Distal spinal muscular atrophy Spinal muscular atrophy
11 genes
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6 of 11 corroborated by 2+ sources
TRPV4(2), VRK1(1), SIGMAR1(4), DYNC1H1(4), HSPB1(1), PLEKHG5(2), GARS1(4), HSPB8(1), IGHMBP2(5), FBXO38(1), HSPB3(1)
0.190 0.355 2.44e-22 5.11e-21 ✓ sig. Cluster 15 →
Seborrheic keratosis Skin cancer
13 genes
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TERT(1), BNC2(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), PTPN22(1), LPP(1), TYR(1), CASP8(1), CPVL(1), FLACC1(1) +1 more
0.127 0.419 2.31e-22 4.86e-21 ✓ sig. Cluster 29 →
Hypothyroidism Sarcoidosis
34 genes
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9 of 34 corroborated by 2+ sources
SH2B3(1), BTNL2(5), HLA-C(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(5), HLA-DRB5(1), TNXB(1), C2(1), PPARG(1), TAP2(1) +22 more
0.067 0.209 2.30e-22 4.84e-21 ✓ sig. Cluster 28 →
Sjogren syndrome Systemic sclerosis
18 genes
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10 of 18 corroborated by 2+ sources
DGKQ(3), HLA-DQA1(2), HLA-DRA(1), HLA-DRB1(2), TNIP1(3), HLA-DQB1(2), ATG5(1), MMP9(2), HLA-DPB1(1), IRF5(2), PTPN22(2), TNFAIP3(3) +6 more
0.099 0.254 2.24e-22 4.72e-21 ✓ sig. Cluster 25 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.