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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Kidney disease Nephrolithiasis
25 genes
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8 of 25 corroborated by 2+ sources
BCAS3(1), L3MBTL3(1), PRKAG2(1), SHROOM3(1), STC1(1), VEGFA(1), WDR72(1), PTGS2(3), RNLS(2), FTO(1), PDILT(1), UMOD(3) +13 more
0.048 0.208 1.96e-15 2.89e-14 ✓ sig. —
46,xy partial gonadal dysgenesis Swyer syndrome
5 genes
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5 of 5 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(2), DHX37(2), MAP3K1(2)
0.357 0.625 1.96e-15 2.88e-14 ✓ sig. Cluster 38 →
Digeorge syndrome Velocardiofacial syndrome
5 genes
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5 of 5 corroborated by 2+ sources
TBX1(6), DGCR8(4), DGCR2(4), DGCR6(4), ESS2(4)
0.250 1.000 1.61e-15 2.38e-14 ✓ sig. —
Anxiety disorder Psychiatric disorders
21 genes
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7 of 21 corroborated by 2+ sources
RAI1(2), DCC(1), HTR1A(2), MAPT(2), SORCS3(1), THSD7A(1), TMEM106B(1), ZSCAN12(1), CRH(2), DRD2(3), MECP2(2), CACNA1C(3) +9 more
0.061 0.144 1.59e-15 2.35e-14 ✓ sig. —
Cone-rod dystrophy Night blindness, congenital stationary
9 genes
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6 of 9 corroborated by 2+ sources
ABCA4(7), CACNA1F(4), PDE6B(3), USH2A(1), GUCY2D(6), RBP3(1), CABP4(1), RHO(3), RPGR(3)
0.099 0.360 1.59e-15 2.35e-14 ✓ sig. —
Thrombocytopenia Venous thrombosis
10 genes
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10 of 10 corroborated by 2+ sources
F13A1(2), EPO(2), MTHFR(2), CSF2(2), PLAT(2), JAK2(2), LPA(2), SERPINC1(2), PLG(2), F7(2)
0.066 0.455 1.53e-15 2.26e-14 ✓ sig. —
Cerebrovascular disorder Peripheral arterial disease
16 genes
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7 of 16 corroborated by 2+ sources
SH2B3(2), HDAC9(2), LDLR(1), SMARCA4(1), MTHFR(1), ATXN2(1), IL6(2), TWIST1(1), ABO(2), CELSR2(1), LPA(1), F5(2) +4 more
0.065 0.190 1.52e-15 2.24e-14 ✓ sig. Cluster 307 →
complex hereditary spastic paraplegia Spastic paraplegia
7 genes
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7 of 7 corroborated by 2+ sources
NT5C2(6), B4GALNT1(5), GBA2(5), DSTYK(6), VPS37A(6), ENTPD1(5), MAG(5)
0.058 1.000 1.46e-15 2.17e-14 ✓ sig. Cluster 244 →
Interstitial cystitis Pemphigus vulgaris
6 genes
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1 of 6 corroborated by 2+ sources
0.143 0.857 1.45e-15 2.15e-14 ✓ sig. Cluster 1 →
Cardiomegaly Hypotension
12 genes
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ADRA1B(1), AGT(1), REN(1), IL1B(1), TNF(1), POMC(1), NPPB(1), NPPA(1), EDN1(1), ADRA2A(1), APLN(1), CTF1(1)
0.086 0.179 1.45e-15 2.14e-14 ✓ sig. —
Diabetic retinopathy Gestational diabetes
16 genes
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7 of 16 corroborated by 2+ sources
CDKAL1(2), TCF7L2(2), INSR(2), IL6(1), GAD2(2), HLA-DQB1(2), GCKR(1), KCNQ1(1), ADIPOQ(2), SLC30A8(1), TRIB2(1), CCND2(1) +4 more
0.067 0.178 1.42e-15 2.11e-14 ✓ sig. Cluster 73 →
Intellectual developmental disorder, x-linked X-linked syndromic intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
CASK(3), RPL10(5), BRWD3(6), LAS1L(3), NONO(4), DDX3X(6), USP9X(6)
0.077 0.875 1.35e-15 2.00e-14 ✓ sig. —
Heart disease Vascular disease
13 genes
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4 of 13 corroborated by 2+ sources
AGT(2), HDAC9(1), EPO(2), GCG(2), ATXN2(1), ABO(1), SLC19A2(1), CELSR2(1), LPA(1), PSRC1(1), F5(1), TIMP1(2) +1 more
0.070 0.250 1.35e-15 2.00e-14 ✓ sig. —
Russell-silver syndrome Silver-russell syndrome
5 genes
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5 of 5 corroborated by 2+ sources
HMGA2(6), FOXP2(2), IGF2(7), CDKN1C(3), PLAG1(5)
0.357 0.714 1.34e-15 2.00e-14 ✓ sig. Cluster 199 →
Bone disease Cartilage disease
8 genes
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1 of 8 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), NPPC(2), DAB2IP(1), PDZRN3(1), CETN3(1), FAM180A(1), MTPN(1)
0.090 0.571 1.33e-15 1.98e-14 ✓ sig. —
Esophageal neoplasms Esophageal squamous cell carcinoma
14 genes
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1 of 14 corroborated by 2+ sources
WWOX(1), TP53(1), EGFR(1), ALDH2(1), SOD2(1), PTGS2(1), TPM1(1), PRDX1(1), ADH1B(1), CDKN2A(1), CASP8(2), CCND1(1) +2 more
0.074 0.189 1.22e-15 1.81e-14 ✓ sig. Cluster 5 →
Congenital nemaline myopathy Nemaline myopathy
5 genes
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5 of 5 corroborated by 2+ sources
ACTA1(3), LMOD3(7), NEB(7), KLHL41(7), KLHL40(6)
0.263 1.000 1.19e-15 1.77e-14 ✓ sig. Cluster 51 →
Catalepsy Hyperkinesia
7 genes
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7 of 7 corroborated by 2+ sources
GCG(2), DRD1(2), DRD2(2), CCK(2), NTS(2), CALCA(2), TH(2)
0.163 0.438 1.19e-15 1.77e-14 ✓ sig. Cluster 13 →
Microcephaly Seckel syndrome
9 genes
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8 of 9 corroborated by 2+ sources
CENPE(6), TRAIP(5), CDK5RAP2(4), RBBP8(7), PLK4(6), CEP152(6), CEP63(6), CPAP(6), RNF17(1)
0.078 0.500 1.13e-15 1.69e-14 ✓ sig. Cluster 101 →
Cerebrovascular disorder Peripheral vascular disease
10 genes
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5 of 10 corroborated by 2+ sources
HDAC9(2), ATXN2(1), TWIST1(1), ABO(2), CELSR2(1), LPA(1), PSRC1(1), F5(2), ANK2(2), EDNRA(2)
0.093 0.303 1.12e-15 1.68e-14 ✓ sig. Cluster 307 →
Desbuquois syndrome Intellectual developmental disorder
79 genes
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79 of 79 corroborated by 2+ sources
ANKRD11(2), NF1(2), NFIX(2), SKI(2), HDAC4(2), FGD1(2), KIF7(2), ZSWIM6(2), NPR2(2), ACTB(2), PEX7(2), ALG3(2) +67 more
0.061 0.139 1.10e-15 1.65e-14 ✓ sig. —
Essential thrombocythemia Thrombocythemia
5 genes
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5 of 5 corroborated by 2+ sources
SH2B3(4), MPL(6), THPO(4), JAK2(6), CALR(4)
0.333 0.833 1.07e-15 1.60e-14 ✓ sig. Cluster 53 →
Essential thrombocythemia Thrombocytosis
5 genes
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5 of 5 corroborated by 2+ sources
SH2B3(3), MPL(4), THPO(4), JAK2(3), CALR(3)
0.333 0.833 1.07e-15 1.60e-14 ✓ sig. Cluster 53 →
Meniere disease nonsyndromic genetic hearing loss
12 genes
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12 of 12 corroborated by 2+ sources
OTOGL(2), PCDH15(2), OTOG(2), TNC(2), MYO6(2), CDH23(2), MYO7A(2), WFS1(2), MYH14(2), TECTA(2), EPS8L2(2), USH1C(2)
0.087 0.179 1.07e-15 1.60e-14 ✓ sig. Cluster 26 →
Catalepsy Hypotension
8 genes
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8 of 8 corroborated by 2+ sources
AGT(2), GCG(2), PRL(2), POMC(2), DRD1(2), DRD2(2), CNR1(2), ADORA1(2)
0.105 0.500 1.04e-15 1.56e-14 ✓ sig. Cluster 13 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.