Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypertriglyceridemia Lipoprotein lipase deficiency
7 genes
Show details
6 of 7 corroborated by 2+ sources
APOB(3), LPL(5), ZPR1(2), GCKR(3), CETP(2), TDRD15(1), APOA5(4)
0.135 0.250 5.77e-14 7.62e-13 ✓ sig. Cluster 254 →
Bone fracture Osteoporosis
13 genes
Show details
3 of 13 corroborated by 2+ sources
AXIN1(1), RSPO3(1), CYP19A1(3), ESR1(2), WNT16(1), CCDC170(1), SOX6(1), SEM1(1), DOK6(1), LRP5(4), AQP1(1), SFRP4(1) +1 more
0.064 0.191 5.84e-14 7.71e-13 ✓ sig. —
Hyperinsulinism monogenic diabetes
6 genes
Show details
6 of 6 corroborated by 2+ sources
INS(3), ABCC8(5), HNF4A(4), KCNJ11(4), GCK(4), HNF1A(4)
0.128 0.600 5.91e-14 7.79e-13 ✓ sig. Cluster 36 →
Fatty liver, alcoholic Ventricular dysfunction
10 genes
Show details
10 of 10 corroborated by 2+ sources
INS(2), NFE2L2(2), SOD2(2), TLR4(2), TNF(2), AKT1(2), SIRT1(2), ADRB2(2), LEPR(2), SIRT6(2)
0.081 0.217 5.96e-14 7.86e-13 ✓ sig. —
Noonan syndrome noonan syndrome with multiple lentigines
5 genes
Show details
5 of 5 corroborated by 2+ sources
BRAF(7), NRAS(7), RAF1(7), PTPN11(7), MAP2K1(6)
0.132 1.000 6.05e-14 7.97e-13 ✓ sig. Cluster 42 →
Leber congenital amaurosis Senior-loken syndrome
7 genes
Show details
6 of 7 corroborated by 2+ sources
NPHP4(6), NPHP3(3), NPHP1(5), CEP290(7), WDR19(5), IQCB1(6), RLIG1(1)
0.089 0.538 6.08e-14 8.00e-13 ✓ sig. —
Chronic obstructive pulmonary disease Cystic fibrosis
9 genes
Show details
8 of 9 corroborated by 2+ sources
SERPINA1(3), NOS3(2), AGER(1), HMOX1(4), TNF(2), EPHX1(2), TGFB1(5), CYP1A1(2), MIF(3)
0.094 0.214 6.10e-14 8.03e-13 ✓ sig. Cluster 119 →
Brain injuries Status epilepticus
11 genes
Show details
11 of 11 corroborated by 2+ sources
VEGFA(2), BDNF(2), EPO(2), TNF(2), FOS(2), PTGS2(2), CCL2(2), NOS2(2), IL1RN(2), JUN(2), BECN1(2)
0.079 0.157 6.17e-14 8.12e-13 ✓ sig. Cluster 114 →
Polydactyly Syndactyly
7 genes
Show details
6 of 7 corroborated by 2+ sources
LMBR1(4), GLI3(4), TULP1(1), HOXD13(5), SHH(2), IQCE(4), CIBAR1(5)
0.127 0.318 6.28e-14 8.25e-13 ✓ sig. —
Ankylosing spondylitis Iga nephropathy
26 genes
Show details
11 of 26 corroborated by 2+ sources
ACE(1), ANKRD55(1), ETS1(1), HLA-DQA1(2), HLA-DRB1(2), IKZF1(1), TENM3(1), TTC33(1), PLAU(2), TAP2(2), OSMR(1), HLA-DQB1(2) +14 more
0.053 0.128 6.60e-14 8.66e-13 ✓ sig. Cluster 28 →
Nuclear cataract Posterior polar cataract
5 genes
Show details
5 of 5 corroborated by 2+ sources
EPHA2(3), CRYAB(2), MIP(3), CRYBA1(2), GJA3(3)
0.227 0.625 6.64e-14 8.72e-13 ✓ sig. Cluster 43 →
Cutaneous mastocytosis Systemic mastocytosis
6 genes
Show details
1 of 6 corroborated by 2+ sources
HBE1(1), HBG2(1), KIT(3), ABCA2(1), OR51B5(1), OR51Q1(1)
0.171 0.353 6.69e-14 8.76e-13 ✓ sig. Cluster 235 →
Maturity-onset diabetes of the young (mody) Neonatal diabetes mellitus
6 genes
Show details
5 of 6 corroborated by 2+ sources
INS(5), INS-IGF2(1), ABCC8(3), KCNJ11(6), GCK(6), PDX1(6)
0.171 0.353 6.69e-14 8.76e-13 ✓ sig. Cluster 36 →
Congenital hyperinsulinism Hypoglycemia
5 genes
Show details
4 of 5 corroborated by 2+ sources
ABCC8(4), HNF4A(2), KCNJ11(2), GCK(2), GLUD1(1)
0.172 0.833 6.71e-14 8.79e-13 ✓ sig. Cluster 36 →
Cystic kidney disease Meckel-gruber syndrome
7 genes
Show details
7 of 7 corroborated by 2+ sources
CC2D2A(5), RPGRIP1L(5), TMEM67(6), CEP290(5), TMEM216(6), MKS1(7), TCTN2(5)
0.132 0.269 6.72e-14 8.79e-13 ✓ sig. Cluster 8 →
Epiphyseal dysplasia Stickler syndrome
5 genes
Show details
4 of 5 corroborated by 2+ sources
COL2A1(7), COL1A1(1), COL9A1(8), COL9A2(7), COL9A3(8)
0.250 0.500 6.98e-14 9.13e-13 ✓ sig. Cluster 248 →
Hyperthyroidism Toxic nodular goiter
7 genes
Show details
NFIA(1), NRG1(1), TG(1), FAM227B(1), PRDM11(1), FGF7(1), MICOS10(1)
0.109 0.412 7.18e-14 9.39e-13 ✓ sig. —
Apert syndrome Cryptophthalmos syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.444 0.800 7.47e-14 9.76e-13 ✓ sig. Cluster 48 →
Apert syndrome Cyclocephaly
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.444 0.800 7.47e-14 9.76e-13 ✓ sig. Cluster 48 →
Psoriatic arthritis Stevens-johnson syndrome
11 genes
Show details
4 of 11 corroborated by 2+ sources
HLA-C(2), TAP2(1), POU5F1(1), HLA-DQB1(2), HLA-B(4), MICA(1), MUC22(1), NOS2(3), SLC22A23(1), HLA-F(1), BAG6(1)
0.078 0.151 7.50e-14 9.78e-13 ✓ sig. —
Congenital muscular dystrophy Congenital muscular dystrophy due to dystroglycanopathy
5 genes
Show details
5 of 5 corroborated by 2+ sources
GMPPB(3), LARGE1(2), CRPPA(3), POMGNT1(3), FKRP(4)
0.200 0.714 7.66e-14 9.99e-13 ✓ sig. Cluster 14 →
Psoriatic arthritis Toxic epidermal necrolysis
9 genes
Show details
2 of 9 corroborated by 2+ sources
HLA-C(2), TAP2(1), POU5F1(1), HLA-B(2), MICA(1), MUC22(1), SLC22A23(1), HLA-F(1), BAG6(1)
0.088 0.243 8.13e-14 1.06e-12 ✓ sig. —
Diabetes microvascular complications Diabetic angiopathies
5 genes
Show details
5 of 5 corroborated by 2+ sources
VEGFA(3), EPO(3), PON1(2), SOD2(3), IL1RN(3)
0.167 0.833 8.17e-14 1.06e-12 ✓ sig. —
Diabetes microvascular complications Diabetic peripheral angiopathy
5 genes
Show details
5 of 5 corroborated by 2+ sources
VEGFA(3), EPO(3), PON1(2), SOD2(3), IL1RN(3)
0.167 0.833 8.17e-14 1.06e-12 ✓ sig. —
Congenital aneurysm of ascending aorta familial thoracic aortic aneurysm and aortic dissection
5 genes
Show details
5 of 5 corroborated by 2+ sources
FBN1(2), FOXE3(2), MYH11(2), LOX(2), MYLK(2)
0.250 0.417 8.68e-14 1.13e-12 ✓ sig. Cluster 12 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.