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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Adult myoclonic epilepsy Benign myoclonic epilepsy
6 genes
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6 of 6 corroborated by 2+ sources
CTNND2(3), ADRA2B(3), CNTN2(3), MARCHF6(3), SAMD12(3), YEATS2(3)
0.667 1.000 1.51e-21 3.07e-20 ✓ sig. Cluster 357 →
Intrahepatic bile duct cancer Liver cancer
6 genes
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GATAD2A(1), MAU2(1), HLA-DQB1(1), IFNL3(1), PNPLA3(1), KLHL8(1)
0.667 1.000 1.51e-21 3.07e-20 ✓ sig. —
Iga nephropathy Ulcerative colitis
45 genes
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17 of 45 corroborated by 2+ sources
ATP2A2(1), NOTCH2(2), ANKRD55(1), CTNNA3(1), ETS1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(3), IFT81(1), IKZF1(3), RORA(1), SERINC5(1) +33 more
0.058 0.222 1.51e-21 3.07e-20 ✓ sig. Cluster 28 →
Catecholaminergic polymorphic ventricular tachycardia Conduction disorder of the heart
9 genes
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4 of 9 corroborated by 2+ sources
DSG2(1), PKP2(2), TRPM4(1), DSP(1), CASQ2(7), KCNH2(1), RYR2(7), SCN5A(1), ANK2(3)
0.250 0.450 1.63e-21 3.29e-20 ✓ sig. Cluster 4 →
Isolated sensorineural deafness Nonsyndromic intellectual disability
21 genes
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21 of 21 corroborated by 2+ sources
OTOF(4), OTOGL(2), PNPT1(3), TMC1(4), MET(3), DCDC2(3), TBC1D24(2), CABP2(3), LOXHD1(3), PTPRQ(3), KARS1(3), ELMOD3(3) +9 more
0.088 0.176 1.85e-21 3.73e-20 ✓ sig. —
Gallstones Liver disease
22 genes
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7 of 22 corroborated by 2+ sources
SERPINA1(3), ABCG8(2), APOE(1), ARHGEF28(1), GCKR(1), CCK(2), ABCB1(1), HNF4A(1), UGT1A10(1), UGT1A8(1), UGT1A9(1), CYP7A1(1) +10 more
0.085 0.177 1.96e-21 3.95e-20 ✓ sig. —
Centronuclear myopathy Congenital structural myopathy
8 genes
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6 of 8 corroborated by 2+ sources
BIN1(4), MTM1(1), MTMR14(3), RYR1(3), TPM3(1), DNM2(4), MYF6(2), CCDC78(3)
0.296 0.667 2.02e-21 4.06e-20 ✓ sig. Cluster 189 →
Thromboembolism Venous thrombosis
8 genes
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PLAU(1), F2(1), PLAT(1), JAK2(1), LPA(1), F5(1), PROC(1), F7(1)
0.296 0.667 2.02e-21 4.06e-20 ✓ sig. Cluster 55 →
Anophthalmia Microphthalmia
9 genes
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9 of 9 corroborated by 2+ sources
RARB(7), PAX6(2), SOX2(3), STRA6(3), OTX2(3), RAX(3), VSX2(6), RBP4(5), SMOC1(5)
0.205 0.643 2.42e-21 4.87e-20 ✓ sig. Cluster 56 →
Left ventricular noncompaction cardiomyopathy Restrictive cardiomyopathy
10 genes
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3 of 10 corroborated by 2+ sources
PRDM16(1), DMD(1), MYPN(3), DSP(1), MYH6(1), MYH7(1), TTN(1), ACTC1(1), TNNI3(3), TNNT2(3)
0.192 0.435 2.57e-21 5.17e-20 ✓ sig. Cluster 4 →
Permanent neonatal diabetes mellitus Transient neonatal diabetes mellitus
7 genes
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7 of 7 corroborated by 2+ sources
HNF1B(2), INS(5), GATA4(2), ABCC8(6), KCNJ11(6), GCK(6), SLC2A2(2)
0.412 0.778 3.04e-21 6.10e-20 ✓ sig. Cluster 36 →
Hashimoto disease Hyperthyroidism
11 genes
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2 of 11 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), ICOS(1), BACH2(1), CTLA4(3), IL2RA(1), PTPN22(1), TG(3), LPP(1), VAV3(1), PDE8B(1)
0.157 0.407 3.32e-21 6.65e-20 ✓ sig. Cluster 39 →
Diabetes mellitus Gestational diabetes
24 genes
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7 of 24 corroborated by 2+ sources
CDKAL1(2), GLIS3(1), HLA-DQB3(1), LINGO2(1), TCF7L2(2), ZBTB20(3), ZNF804A(1), INSR(1), IL6(1), HLA-DQB1(1), GCKR(1), KCNQ1(1) +12 more
0.066 0.267 3.59e-21 7.20e-20 ✓ sig. Cluster 73 →
Anophthalmia/microphthalmia-esophageal atresia syndrome Microphthalmos
10 genes
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9 of 10 corroborated by 2+ sources
PITX3(3), TFAP2A(2), PAX6(2), SOX2(4), STRA6(2), OTX2(2), PORCN(2), RAX(2), VAX1(2), VSX2(1)
0.192 0.400 3.94e-21 7.90e-20 ✓ sig. Cluster 56 →
Mesothelioma Peritoneal neoplasms
10 genes
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1 of 10 corroborated by 2+ sources
WT1(3), PDPN(1), CALB2(1), VIM(1), CTNNB1(1), SLC2A1(1), MCAM(1), MUC1(1), IGF2BP3(1), MLANA(1)
0.068 1.000 4.00e-21 8.01e-20 ✓ sig. —
Cerebellar ataxia Postaxial polydactyly
12 genes
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KIF7(1), ND1(1), ND2(1), ATP6(1), COX3(1), ATP8(1), COX1(1), ND5(1), COX2(1), ND3(1), ND4(1), ND4L(1)
0.097 0.571 4.16e-21 8.32e-20 ✓ sig. —
Limb girdle muscular dystrophy Myopathy
14 genes
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12 of 14 corroborated by 2+ sources
DAG1(2), PLEC(2), HMGCR(4), ASTN2(1), CRPPA(3), TRAPPC11(6), ANO5(4), TTN(3), DYSF(6), LAMA2(1), CAPN3(7), TOR1AIP1(6) +2 more
0.102 0.368 4.19e-21 8.37e-20 ✓ sig. Cluster 14 →
Leigh syndrome Mitochondrial encephalomyopathy
11 genes
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11 of 11 corroborated by 2+ sources
MTRFR(3), FARS2(3), NDUFS2(5), POLG(2), DNM1L(4), SCO2(3), NDUFV2(4), LONP1(4), FBXL4(3), FOXRED1(5), MFF(2)
0.097 0.688 4.57e-21 9.11e-20 ✓ sig. Cluster 50 →
Hodgkin lymphoma Non-hodgkins lymphoma
20 genes
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TCF3(1), CELF2(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), BCL2(1), HLA-DQB1(1), EXOC2(1), IRF4(1), EOMES(1), SP140(1) +8 more
0.088 0.180 4.63e-21 9.24e-20 ✓ sig. —
Left ventricular disease Restrictive cardiomyopathy
11 genes
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6 of 11 corroborated by 2+ sources
PRDM16(6), ACTA1(1), MYPN(3), DSP(1), MYH6(1), SYNE2(2), MYH7(3), TTN(1), ACTC1(2), TNNT2(3), SLC25A4(1)
0.139 0.478 4.85e-21 9.65e-20 ✓ sig. Cluster 4 →
Anxiety disorder Post-traumatic stress disorder
25 genes
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4 of 25 corroborated by 2+ sources
SOX5(1), BPTF(1), ARHGAP15(1), CNTNAP5(1), DCC(1), FOXP2(1), GRM8(3), MAD1L1(1), MAPT(3), PDE4B(1), SDK1(1), SORCS3(1) +13 more
0.077 0.171 5.26e-21 1.05e-19 ✓ sig. Cluster 2 →
hereditary nonpolyposis colon cancer Lynch syndrome
8 genes
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8 of 8 corroborated by 2+ sources
CHEK2(3), SMARCA4(2), EPHX1(2), PTPRJ(2), CDKN1B(2), NFKBIZ(2), XRCC4(2), FAN1(3)
0.160 1.000 5.76e-21 1.15e-19 ✓ sig. —
Atrial septal defect Ventricular septal defect
11 genes
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5 of 11 corroborated by 2+ sources
BMP2(1), CUL9(1), GATA4(6), SMARCA4(1), TBX5(1), TBX20(6), NKX2-5(6), ISL1(1), CITED2(7), GATA6(6), HUWE1(1)
0.164 0.314 5.93e-21 1.18e-19 ✓ sig. Cluster 364 →
Hypertension Open angle glaucoma
84 genes
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23 of 84 corroborated by 2+ sources
HMGA2(1), PRDM16(1), RERE(1), ZFPM2(1), CHEK2(1), RUNX1(1), TP53(2), SPI1(1), ALCAM(1), APOE(3), BCAS3(1), BNC2(1) +72 more
0.059 0.228 6.97e-21 1.38e-19 ✓ sig. —
Ciliopathy Orofaciodigital syndrome
12 genes
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11 of 12 corroborated by 2+ sources
WDPCP(3), TMEM216(4), TMEM231(4), SCLT1(1), TBC1D32(5), IFT57(5), OFD1(6), TOPORS(3), TCTN3(7), TMEM107(4), PDE6D(3), DDX59(7)
0.130 0.375 7.29e-21 1.45e-19 ✓ sig. Cluster 8 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.