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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Arrhythmogenic right ventricular cardiomyopathy Cardiac arrest
12 genes
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5 of 12 corroborated by 2+ sources
CACNB2(1), DSG2(6), TRPM4(1), DSP(4), MYH6(1), CEP85L(1), PLN(3), RYR2(3), SCN5A(3), ANK2(1), HCN4(1), MYOM1(1)
0.179 0.462 5.22e-24 1.21e-22 ✓ sig. Cluster 4 →
Dystonia Dystonia musculorum deformans
9 genes
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9 of 9 corroborated by 2+ sources
COL6A3(7), GCH1(4), THAP1(4), TOR1A(3), TUBB4A(3), TAF1(3), GNAL(5), HPCA(4), SGCE(2)
0.200 1.000 5.30e-24 1.22e-22 ✓ sig. Cluster 167 →
Dystonia Genetic torsion dystonia
9 genes
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9 of 9 corroborated by 2+ sources
COL6A3(7), GCH1(4), THAP1(4), TOR1A(3), TUBB4A(3), TAF1(3), GNAL(5), HPCA(3), SGCE(2)
0.200 1.000 5.30e-24 1.22e-22 ✓ sig. Cluster 167 →
Lymphatic metastasis Ovarian neoplasms
15 genes
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GRIK2(1), MACIR(1), SOD2(1), STAT3(1), TRMT11(1), MET(1), ERBB2(1), AQP3(1), CD274(1), CCNH(1), MTOR(1), TP53BP1(1) +3 more
0.102 0.500 5.41e-24 1.24e-22 ✓ sig. Cluster 5 →
Cone dystrophy Leber congenital amaurosis
14 genes
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6 of 14 corroborated by 2+ sources
ABCA4(1), CNGB3(3), PRPH2(2), PDE6B(1), USH2A(1), CRB1(6), GUCY2D(6), RPGRIP1(6), NMNAT1(6), CFAP410(1), WDR19(1), RPGR(1) +2 more
0.144 0.368 5.53e-24 1.27e-22 ✓ sig. Cluster 7 →
Digestive system disease Diverticular disease
25 genes
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5 of 25 corroborated by 2+ sources
NF1(1), ANO1(1), ARHGAP15(2), CACNB2(1), COLQ(2), MED12L(1), MMS22L(1), SLC35F3(2), TRPS1(1), WDR70(1), BDNF(1), EFEMP1(1) +13 more
0.079 0.269 5.58e-24 1.28e-22 ✓ sig. —
Leber congenital amaurosis Stargardt disease
13 genes
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12 of 13 corroborated by 2+ sources
ABCA4(4), CNGB3(2), PRPH2(3), LRAT(6), CRB1(6), CRX(6), LCA5(7), PROM1(5), TULP1(5), RPE65(6), GPHN(1), SPATA7(7) +1 more
0.148 0.464 5.76e-24 1.32e-22 ✓ sig. Cluster 7 →
Cleft palate Craniofacial abnormalities
19 genes
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19 of 19 corroborated by 2+ sources
FGF8(2), COL2A1(2), TP63(2), BNC2(2), IRF6(2), SPRY2(2), TGFB2(2), FGFR2(2), MSX1(2), PTCH1(2), FGFR1(2), PDGFRA(2) +7 more
0.096 0.317 5.96e-24 1.37e-22 ✓ sig. —
Thrombophilia Venous thromboembolism
19 genes
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11 of 19 corroborated by 2+ sources
WWOX(1), FGA(4), LRAT(1), F2(6), PLAT(4), ABO(1), SLC19A2(1), F5(6), F8(5), PROC(6), PROS1(6), F9(6) +7 more
0.053 0.594 6.24e-24 1.43e-22 ✓ sig. —
Dementia Obesity
121 genes
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11 of 121 corroborated by 2+ sources
DMRT1(1), RUNX1(1), ABCA1(2), AGAP1(1), ANO3(1), APOE(3), ARHGAP24(1), ARHGEF28(1), ASAP1(1), ASB3(1), AUTS2(1), CADM2(2) +109 more
0.073 0.205 6.31e-24 1.44e-22 ✓ sig. Cluster 2 →
Limb girdle muscular dystrophy Muscle eye brain disease
10 genes
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9 of 10 corroborated by 2+ sources
DAG1(3), GMPPB(4), CRPPA(4), POMT1(4), POMT2(4), POMGNT1(5), TSPAN1(1), FKRP(5), FKTN(5), POMK(4)
0.227 0.667 6.84e-24 1.56e-22 ✓ sig. Cluster 14 →
Breast neoplasms Liver neoplasms
39 genes
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2 of 39 corroborated by 2+ sources
TERT(1), TP53(1), ATP7B(1), FST(1), GRIK2(1), MACIR(1), ESR1(2), HMOX1(1), NFE2L2(1), STAT3(1), TNF(1), PHGDH(1) +27 more
0.062 0.257 6.94e-24 1.58e-22 ✓ sig. Cluster 5 →
Fahr's disease Idiopathic basal ganglia calcification
7 genes
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7 of 7 corroborated by 2+ sources
PDGFRB(5), XPR1(5), PDGFB(5), JAM2(5), SLC20A2(5), MYORG(5), NAA60(5)
0.583 1.000 8.11e-24 1.85e-22 ✓ sig. Cluster 390 →
Cystic fibrosis Obstructive airway disease
17 genes
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5 of 17 corroborated by 2+ sources
SERPINA1(3), NOS3(1), GSTT1(1), HMOX1(3), HSPA1A(1), IL1B(1), MBL2(1), TNF(1), EPHX1(1), GSTM1(1), PTGS2(1), SERPINA3(1) +5 more
0.116 0.274 9.12e-24 2.08e-22 ✓ sig. Cluster 119 →
Congenital brain malformation Joubert syndrome
11 genes
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11 of 11 corroborated by 2+ sources
ARL3(5), TMEM216(6), TMEM237(6), KIAA0586(5), KIAA0753(4), IFT74(4), INPP5E(6), TOGARAM1(5), B9D2(2), TMEM218(5), FAM149B1(3)
0.169 0.647 9.62e-24 2.19e-22 ✓ sig. —
Congenital hypoplasia of part of brain Joubert syndrome
11 genes
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11 of 11 corroborated by 2+ sources
ARL3(5), TMEM216(6), TMEM237(6), KIAA0586(5), KIAA0753(4), IFT74(4), INPP5E(6), TOGARAM1(5), B9D2(2), TMEM218(5), FAM149B1(3)
0.169 0.647 9.62e-24 2.19e-22 ✓ sig. —
Conduction disorder of the heart Left ventricular noncompaction cardiomyopathy
11 genes
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DMD(1), DSG2(1), JUP(1), PKP2(1), RBM20(1), DSP(1), MYH6(1), RYR2(1), SCN5A(1), MYH7(1), TTN(1)
0.212 0.458 1.02e-23 2.32e-22 ✓ sig. Cluster 4 →
Constitutional mismatch repair deficiency Lynch syndrome
10 genes
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5 of 10 corroborated by 2+ sources
MSH2(8), MSH6(8), APC(1), TGFBR2(5), RNASET2(1), PMS2(7), TAF1B(1), MLH1(8), ASTE1(1), SLC22A9(1)
0.189 0.769 1.13e-23 2.57e-22 ✓ sig. Cluster 166 →
Nasal polyp Seasonal allergic rhinitis
15 genes
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1 of 15 corroborated by 2+ sources
ERBB3(1), HLA-DQA1(1), RPS26(1), BACH2(1), CLEC16A(1), HLA-B(1), IL18R1(1), IL7R(1), ALOX15(2), IL1RL1(1), IL33(1), RANBP6(1) +3 more
0.120 0.385 1.14e-23 2.58e-22 ✓ sig. Cluster 137 →
Breast neoplasms Mesothelioma
38 genes
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2 of 38 corroborated by 2+ sources
WT1(3), CAT(1), TP53(1), EGFR(1), SPP1(1), BCL2(1), ESR1(2), PARP1(1), SOD2(1), IL6(1), EFEMP1(1), PDGFA(1) +26 more
0.061 0.262 1.16e-23 2.63e-22 ✓ sig. Cluster 5 →
Maturity-onset diabetes of the young (mody) Permanent neonatal diabetes mellitus
9 genes
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8 of 9 corroborated by 2+ sources
HNF1B(2), INS(6), INS-IGF2(1), ABCC8(5), KCNJ11(7), GCK(7), PTF1A(5), PDX1(7), NEUROD1(5)
0.310 0.643 1.22e-23 2.75e-22 ✓ sig. Cluster 36 →
Diabetic eye disease Diabetic polyneuropathy
9 genes
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CDKAL1(1), JAZF1(1), NYAP2(1), TCF7L2(1), HLA-DQB1(1), FTO(1), KCNQ1(1), IGF2BP2(1), WFS1(1)
0.184 1.000 1.25e-23 2.83e-22 ✓ sig. Cluster 73 →
Cutis laxa Darier disease
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.364 0.889 1.45e-23 3.26e-22 ✓ sig. Cluster 80 →
Benign pemphigus Cutis laxa
8 genes
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8 of 8 corroborated by 2+ sources
ALDH18A1(6), ATP6V0A2(8), ELN(7), EFEMP2(7), FBLN5(6), ATP6V1A(8), ATP6V1E1(7), PYCR1(7)
0.364 0.889 1.45e-23 3.26e-22 ✓ sig. Cluster 80 →
Celiac disease Oligoarticular juvenile idiopathic arthritis
28 genes
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15 of 28 corroborated by 2+ sources
NFIA(1), RUNX1(1), ANKRD55(2), HLA-DQA1(4), HLA-DRB1(2), UBE2L3(1), IL2(1), RUNX3(3), ATXN2(1), HLA-DQB1(4), IRF1(1), SMAD3(2) +16 more
0.083 0.165 1.46e-23 3.28e-22 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.