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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Breast neoplasms Ovarian neoplasms
50 genes
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PTEN(1), TERT(1), TP53(1), ATP7B(1), EGFR(1), GRIK2(1), MACIR(1), MECOM(1), NECTIN2(1), YAP1(1), SOD2(1), STAT3(1) +38 more
0.083 0.382 7.70e-40 3.20e-38 ✓ sig. —
Jeune syndrome Jeune thoracic dystrophy
18 genes
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12 of 18 corroborated by 2+ sources
NEK1(1), GRK2(2), IFT80(5), CEP120(3), DYNC2H1(5), DYNC2I1(3), DYNC2I2(3), DYNC2LI1(3), DYNLT2B(1), IFT140(2), IFT172(3), IFT52(1) +6 more
0.310 0.545 9.80e-40 4.06e-38 ✓ sig. Cluster 17 →
Prostatic neoplasms Urinary bladder neoplasms
55 genes
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USP7(1), CYP17A1(1), TERT(1), TP53(1), ARID1A(1), EGFR(1), ERCC2(1), ESR2(1), KMT2C(1), NECTIN2(1), MPO(1), ACHE(1) +43 more
0.077 0.387 1.29e-39 5.36e-38 ✓ sig. Cluster 21 →
Hyperlipidemia Lipoprotein lipase deficiency
22 genes
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5 of 22 corroborated by 2+ sources
APOB(3), APOC1(1), APOE(3), FADS1(1), FADS2(1), LDLR(3), MLXIPL(1), NYAP2(1), PSD3(1), SMARCA4(1), VEGFA(1), LPL(7) +10 more
0.147 0.733 1.43e-39 5.92e-38 ✓ sig. Cluster 51 →
Graves disease Hashimoto disease
20 genes
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9 of 20 corroborated by 2+ sources
FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), IL6R(2), PRICKLE1(1), PRSS36(1), IL6(2), BACH2(1), CTLA4(4), IL2RA(1), PTPN22(3) +8 more
0.187 0.741 1.61e-39 6.66e-38 ✓ sig. Cluster 307 →
Hypercholesterolemia Hyperlipoproteinemia
19 genes
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17 of 19 corroborated by 2+ sources
ABCA1(2), APOB(6), APOE(5), EPHX2(3), GHR(3), LDLR(6), LIPC(2), APOA4(2), HMGCR(2), LPL(4), PON1(2), PON2(2) +7 more
0.279 0.475 1.78e-39 7.31e-38 ✓ sig. Cluster 51 →
Hodgkin lymphoma Lymphocytic leukemia
30 genes
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DTNB(1), GRAMD1B(1), HLA-DQA1(1), HLA-DRB1(1), ULK4(1), BCL2(1), HLA-DQB1(1), EXOC2(1), IRF4(1), EOMES(1), PTPRK(1), SP140(1) +18 more
0.152 0.270 1.88e-39 7.73e-38 ✓ sig. Cluster 210 →
Psoriasis vulgaris Sclerosing cholangitis
29 genes
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IFIH1(1), CDKAL1(1), ETS1(1), TNIP1(1), UBE2L3(1), RUNX3(1), SLC9A8(1), IRF1(1), ERAP1(1), FAP(1), GRHL3(1), HLA-B(1) +17 more
0.113 0.537 2.25e-39 9.23e-38 ✓ sig. —
Autoimmune thyroid disease Vitiligo
33 genes
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9 of 33 corroborated by 2+ sources
RERE(1), SH2B3(3), IFIH1(3), BTNL2(1), FAM76B(1), HLA-DQA1(2), HLA-DRB1(2), ICOS(1), RHOH(1), MBL2(1), ATXN2(1), HLA-DQB1(1) +21 more
0.139 0.262 2.60e-39 1.06e-37 ✓ sig. —
Maturity-onset diabetes of the young Maturity-onset diabetes of the young (mody)
13 genes
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13 of 13 corroborated by 2+ sources
INS(6), BLK(7), KLF11(6), ABCC8(4), HNF4A(6), PAX4(5), KCNJ11(7), GCK(7), HNF1A(6), PDX1(7), NEUROD1(6), CEL(8) +1 more
0.542 1.000 2.62e-39 1.07e-37 ✓ sig. Cluster 35 →
Diabetic eye disease Diabetic neuropathy
28 genes
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3 of 28 corroborated by 2+ sources
CDKAL1(1), HMG20A(1), JAZF1(1), MACF1(1), MACIR(1), NRXN3(1), NYAP2(1), TCF7L2(1), TRPS1(1), PPARG(3), HLA-DQB1(1), TGFB1(3) +16 more
0.110 0.583 3.02e-39 1.23e-37 ✓ sig. Cluster 155 →
Anxiety disorder Mood disorder
43 genes
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23 of 43 corroborated by 2+ sources
SERPINA1(2), ARHGAP15(1), CELF4(1), DCC(1), DISC1(2), FOXP2(1), GRM8(3), HTR1A(1), HTR7(2), MAD1L1(1), MAPT(3), NTRK2(2) +31 more
0.107 0.295 3.40e-39 1.38e-37 ✓ sig. Cluster 2 →
Gout Metabolic syndrome
188 genes
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6 of 188 corroborated by 2+ sources
SKI(1), JMJD1C(1), RREB1(1), INS(3), GNAT2(1), ATP2A2(1), ABCA1(1), ABCA6(1), ADGRL2(1), ALDH1A2(1), APLNR(1), APOC1(1) +176 more
0.097 0.230 4.53e-39 1.84e-37 ✓ sig. Cluster 2 →
Peroxisome biogenesis disorder Zellweger spectrum disorder
13 genes
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13 of 13 corroborated by 2+ sources
PEX14(7), PEX6(7), PEX10(7), PEX16(7), PEX2(7), PEX5(6), PEX11B(6), PEX1(7), PEX13(7), PEX26(7), PEX12(7), PEX19(7) +1 more
0.520 1.000 5.71e-39 2.31e-37 ✓ sig. —
Alzheimer disease Diabetes mellitus type 2
681 genes
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112 of 681 corroborated by 2+ sources
WT1(2), HMGA2(1), ANKRD11(1), HNF1B(6), KANSL1(1), NFIX(1), HSPG2(1), RERE(1), ARVCF(1), JMJD1C(1), RREB1(1), INS(3) +669 more
0.147 0.307 6.26e-39 2.53e-37 ✓ sig. Cluster 2 →
Diabetes mellitus Hyperlipidemia
42 genes
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12 of 42 corroborated by 2+ sources
ALDH1A2(1), APOB(3), APOC1(1), APOE(3), BCL3(1), FADS1(1), FADS2(1), HLA-C(1), HLA-DQA1(1), LIPC(6), MLXIPL(1), NYAP2(1) +30 more
0.106 0.298 1.19e-38 4.82e-37 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy Limb girdle muscular dystrophy
14 genes
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14 of 14 corroborated by 2+ sources
SGCA(5), HMGCR(4), TRAPPC11(6), ANO5(4), SGCD(6), DYSF(6), SGCG(6), TCAP(4), POPDC3(3), CAPN3(7), JAG2(3), POGLUT1(4) +2 more
0.359 1.000 2.01e-38 8.11e-37 ✓ sig. Cluster 243 →
Squamous cell carcinoma Upper aerodigestive tract neoplasm
62 genes
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3 of 62 corroborated by 2+ sources
CHEK2(1), TP53(2), ABT1(1), EMB(1), GLIS3(1), GRIK1(1), HCN1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(1), NPAS3(1), NYAP2(1) +50 more
0.070 0.385 2.15e-38 8.66e-37 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia Long qt syndrome
18 genes
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13 of 18 corroborated by 2+ sources
DSG2(1), PKP2(2), TRPM4(1), CALM1(7), DSP(1), KCNJ2(3), TECRL(6), CALM2(7), CALM3(7), CASQ2(7), KCNH2(7), LMNA(1) +6 more
0.171 0.900 2.33e-38 9.34e-37 ✓ sig. Cluster 3 →
Congenital ear anomaly Nonsyndromic hearing loss
21 genes
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16 of 21 corroborated by 2+ sources
CEACAM16(3), MYO15A(3), OTOF(1), PCDH15(3), TMC1(4), SLC26A4(3), COL11A2(3), MYO6(4), CDH23(3), MYO7A(4), GJB2(4), TBCEL-TECTA(1) +9 more
0.163 0.677 2.38e-38 9.55e-37 ✓ sig. Cluster 20 →
Congenital ear anomaly Isolated sensorineural deafness
21 genes
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CEACAM16(1), MYO15A(1), OTOF(1), PCDH15(1), TMC1(1), SLC26A4(1), COL11A2(1), MYO6(1), CDH23(1), MYO7A(1), GJB2(1), MITF(1) +9 more
0.162 0.677 2.89e-38 1.16e-36 ✓ sig. Cluster 20 →
Gout Hyperuricemia
42 genes
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7 of 42 corroborated by 2+ sources
RREB1(1), BAZ1B(1), HNF4G(1), NFAT5(1), SLC2A9(3), VEGFA(1), ALDH2(1), IGF1R(1), MALRD1(1), TGFB1(2), XDH(3), UMOD(1) +30 more
0.050 0.656 2.92e-38 1.16e-36 ✓ sig. —
Aortic aneurysm Marfan syndrome
20 genes
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19 of 20 corroborated by 2+ sources
FBN1(7), ARIH1(2), FBN2(2), PRKG1(5), SLC2A10(2), TGFB2(3), THSD4(4), SOD2(2), FLNA(1), SMAD3(2), ACTA2(5), MMP9(2) +8 more
0.233 0.465 3.65e-38 1.46e-36 ✓ sig. Cluster 43 →
Developmental and epileptic encephalopathy Global developmental delay
53 genes
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39 of 53 corroborated by 2+ sources
FOXG1(2), UBE3A(1), WWOX(6), PTEN(1), ATP1A3(5), ACTL6B(5), CACNA1A(5), GRIN2B(4), KCNQ2(7), KMT2C(1), MAF(1), RBFOX1(1) +41 more
0.099 0.241 3.77e-38 1.50e-36 ✓ sig. Cluster 5 →
Inflammatory skin disease Psoriasis vulgaris
22 genes
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IFIH1(1), ELMO1(1), TNIP1(1), FYN(1), TRAF3IP2(1), ERAP1(1), FAP(1), GRHL3(1), IFNLR1(1), IL23R(1), KCNH7(1), LCE3A(1) +10 more
0.202 0.407 4.37e-38 1.73e-36 ✓ sig. —

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.