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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bone disease Metabolic bone disorder
14 genes
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14 of 14 corroborated by 2+ sources
ANKRD11(2), DHCR7(2), ALPL(2), ESR1(2), IGF1(2), KCNMA1(2), LRP2(2), MMP2(2), SLC20A1(2), GC(2), CYP27A1(2), CYP2R1(2) +2 more
0.169 1.000 4.58e-33 1.55e-31 ✓ sig. Cluster 299 →
Asthma Obstructive pulmonary disease
125 genes
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19 of 125 corroborated by 2+ sources
RERE(1), CDH2(1), AFF3(1), APOE(1), ARHGEF28(1), BNC2(1), C6orf118(1), CCDC91(1), COL6A3(1), CSMD1(1), EMSY(1), ERBB3(1) +113 more
0.083 0.224 4.22e-33 1.44e-31 ✓ sig. Cluster 252 →
Focal glomerulosclerosis Idiopathic steroid-resistant nephrotic syndrome
16 genes
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12 of 16 corroborated by 2+ sources
WT1(2), ACTN4(2), ARHGAP24(2), CD2AP(2), MYO1E(2), PAX2(2), PTPRO(1), TRPC6(2), PLCE1(1), ANLN(1), CRB2(2), INF2(1) +4 more
0.229 0.571 3.61e-33 1.23e-31 ✓ sig. Cluster 30 →
Prostatic neoplasms Stomach neoplasms
70 genes
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1 of 70 corroborated by 2+ sources
HNF1B(1), CHEK2(1), TP53(1), ACE(1), ARID1A(1), BNIP3(1), CST1(1), EGFR(1), ERCC2(1), KMT2C(1), SERPINE1(1), ZBTB20(1) +58 more
0.081 0.229 2.83e-33 9.67e-32 ✓ sig. Cluster 5 →
Eczema Seasonal allergic rhinitis
36 genes
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RERE(1), CEBPA(1), BLTP1(1), CCR7(1), EMSY(1), ERBB3(1), HLA-DQA1(1), IQGAP1(1), ITGB8(1), RORA(1), SLC7A10(1), IL2(1) +24 more
0.084 0.360 2.79e-33 9.55e-32 ✓ sig. —
Hepatocellular carcinoma Prostatic neoplasms
102 genes
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21 of 102 corroborated by 2+ sources
CYP17A1(1), HNF1B(2), COMT(1), MAP3K1(2), PTEN(1), TERT(2), TP53(4), ACE(1), ARID1A(1), BAD(2), BRAF(1), CDH13(1) +90 more
0.087 0.163 2.72e-33 9.32e-32 ✓ sig. —
Congenital heart defects Congenital heart disease
26 genes
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24 of 26 corroborated by 2+ sources
TBX1(2), UFD1(2), GATA4(1), CDK13(5), FOXP1(2), TGFB2(2), VEGFA(4), RCAN1(2), POU5F1(2), NPPB(2), PITX2(2), AHR(3) +14 more
0.120 0.371 1.85e-33 6.34e-32 ✓ sig. Cluster 111 →
Hyperlipidemia Myocardial ischemia
42 genes
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28 of 42 corroborated by 2+ sources
ABCA1(2), ABCG8(2), APOB(3), APOC1(1), APOE(3), LDLR(3), LIPC(6), MLXIPL(2), NYAP2(1), SCARB1(1), SMARCA4(1), TCF7L2(3) +30 more
0.086 0.298 1.67e-33 5.74e-32 ✓ sig. —
Cutaneous squamous cell carcinoma Non-small cell lung carcinoma
20 genes
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1 of 20 corroborated by 2+ sources
TP63(1), BNC2(1), FOXP1(1), HLA-DQA1(1), TRPS1(1), OCA2(1), RALY(1), IRF4(1), KRT5(1), BACH2(1), MICA(1), LPP(1) +8 more
0.149 0.526 1.54e-33 5.30e-32 ✓ sig. Cluster 29 →
Congenital muscular dystrophy Muscular dystrophy
15 genes
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9 of 15 corroborated by 2+ sources
GMPPB(3), RIF1(1), LARGE1(2), CRPPA(3), LMNA(4), DYSF(1), NEB(1), LAMA2(1), POMT1(3), POMT2(3), POMGNT1(3), CAPN3(1) +3 more
0.254 0.682 1.09e-33 3.75e-32 ✓ sig. Cluster 14 →
Partington syndrome X-linked intellectual disability
14 genes
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14 of 14 corroborated by 2+ sources
CASK(5), ARX(7), ZC4H2(3), AP1S2(2), RPL10(4), BRWD3(3), LAS1L(3), KDM5C(3), NONO(2), DDX3X(4), RAB40AL(3), PAK3(3) +2 more
0.187 1.000 9.49e-34 3.28e-32 ✓ sig. —
Brugada syndrome Wolff-parkinson-white syndrome
19 genes
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10 of 19 corroborated by 2+ sources
ABCC9(4), COL5A1(1), TBX5(2), TRPM4(4), DSP(1), KCNJ2(1), CACNA1C(7), TBX20(2), KCNH2(3), KCNQ1(1), RYR2(1), SCN5A(8) +7 more
0.198 0.373 9.19e-34 3.18e-32 ✓ sig. Cluster 4 →
Focal glomerulosclerosis Genetic steroid-resistant nephrotic syndrome
17 genes
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WT1(1), ACTN4(1), ARHGAP24(1), CD2AP(1), MYO1E(1), PAX2(1), PTPRO(1), TRPC6(1), PLCE1(1), ANLN(1), CRB2(1), INF2(1) +5 more
0.227 0.500 7.29e-34 2.53e-32 ✓ sig. Cluster 30 →
Skin disease Skin neoplasms
33 genes
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6 of 33 corroborated by 2+ sources
TERT(1), BNC2(1), CUX1(1), EMSY(1), ERCC2(2), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), MYL10(1), TRPS1(1), IL1A(2), SOD2(2) +21 more
0.114 0.228 7.15e-34 2.48e-32 ✓ sig. Cluster 29 →
Congenital anomalies of kidney and urinary tract Congenital anomalies of the kidney and urinary tract
15 genes
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14 of 15 corroborated by 2+ sources
ZMYM2(2), TBC1D1(2), SIX2(2), BMP4(1), TBX18(4), TBX6(3), DLG5(2), SLIT2(2), TSHZ3(2), ARHGEF6(2), NRIP1(4), CHD1L(3) +3 more
0.250 0.714 6.79e-34 2.36e-32 ✓ sig. —
Global developmental delay Non-specific syndromic intellectual disability
61 genes
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25 of 61 corroborated by 2+ sources
ACTL6A(2), VCP(1), ATP1A3(1), ACTL6B(2), BORCS5(1), DOCK3(2), FOXP4(1), GNB2(2), GRIN2B(1), KCNQ2(1), KMT5B(1), NRXN1(1) +49 more
0.090 0.166 6.75e-34 2.35e-32 ✓ sig. Cluster 6 →
Corneal dystrophy Hereditary corneal dystrophy
12 genes
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8 of 12 corroborated by 2+ sources
COL8A2(5), OVOL2(3), TACSTD2(3), VSX1(2), TGFBI(4), CYP4V2(1), KLKB1(1), ZEB1(5), KERA(1), ELOVL4(1), SLC4A11(6), KRT12(5)
0.364 1.000 6.11e-34 2.13e-32 ✓ sig. Cluster 75 →
Left ventricular disease Left ventricular noncompaction cardiomyopathy
18 genes
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9 of 18 corroborated by 2+ sources
PRDM16(6), JUP(1), MYPN(1), PKP2(3), DSP(1), MYH6(1), RYR2(1), LDB3(2), MYBPC3(6), MYH7(3), TTN(1), ACTC1(2) +6 more
0.207 0.474 5.92e-34 2.07e-32 ✓ sig. Cluster 4 →
Colobomatous microphthalmia Microphthalmos
13 genes
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13 of 13 corroborated by 2+ sources
TENM3(2), SHH(3), SOX2(2), STRA6(3), OTX2(2), PORCN(2), RAX(2), VSX2(2), RBP4(2), ALDH1A3(2), GDF6(2), GDF3(2) +1 more
0.333 0.867 5.54e-34 1.94e-32 ✓ sig. Cluster 56 →
Bipolar disorder Psychotic disorders
61 genes
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32 of 61 corroborated by 2+ sources
ADARB1(1), ANK3(3), CDH4(1), FEZ1(2), GCH1(1), GRIK3(2), NPAS3(2), PCNT(1), PDE10A(2), TAFA5(1), TCF4(2), BDNF(2) +49 more
0.047 0.488 3.45e-34 1.21e-32 ✓ sig. —
Skin cancer Skin disease
28 genes
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TERT(1), BNC2(1), CUX1(1), EMSY(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), MYL10(1), TRPS1(1), RALY(1), IRF4(1), KRT5(1) +16 more
0.120 0.337 3.23e-34 1.13e-32 ✓ sig. Cluster 29 →
Developmental disability Global developmental delay
42 genes
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10 of 42 corroborated by 2+ sources
UBE3A(1), ANKRD11(1), SHANK3(2), PTEN(2), ADNP(1), ATRX(1), ARID1B(1), AUTS2(1), GRIN2B(1), KCNQ2(2), SCN8A(1), TCF4(1) +30 more
0.089 0.294 3.17e-34 1.12e-32 ✓ sig. Cluster 6 →
Learning disorders Memory disorders
17 genes
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16 of 17 corroborated by 2+ sources
APP(2), PSEN1(2), HTR1A(2), HTR7(2), MAPT(2), PRKN(2), VEGFA(2), ACHE(2), BCL2(2), IGF1(2), IL1B(2), SIGMAR1(1) +5 more
0.239 0.472 2.85e-34 1.00e-32 ✓ sig. —
Ehlers-danlos syndrome Thoracic aortic aneurysm and aortic dissection
17 genes
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14 of 17 corroborated by 2+ sources
FBN1(6), NOTCH1(1), COL5A1(8), FBN2(3), PLOD1(5), SLC2A10(1), TGFB2(4), FLNA(4), SMAD3(5), COL1A1(7), MED12(1), COL3A1(7) +5 more
0.246 0.415 2.33e-34 8.23e-33 ✓ sig. Cluster 12 →
Seborrheic keratosis Skin disease
21 genes
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TERT(1), TP63(1), BNC2(1), RALY(1), IRF4(1), KRT5(1), SMAD3(1), TTC27(1), PTPN22(1), LPP(1), TYR(1), CASP8(1) +9 more
0.112 0.677 2.21e-34 7.82e-33 ✓ sig. Cluster 29 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.