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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Frontal lobe epilepsy Nocturnal frontal lobe epilepsy
4 genes
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4 of 4 corroborated by 2+ sources
CHRNB2(5), CRH(2), CHRNA4(5), KCNT1(5)
0.364 0.800 2.69e-13 3.42e-12 ✓ sig. Cluster 273 →
Anxiety disorder Cannabis abuse
15 genes
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6 of 15 corroborated by 2+ sources
FOXP2(1), GABRA2(2), PDE4B(1), DRD2(3), DRD4(2), SLC6A4(3), FURIN(1), NCAM1(1), TMPRSS5(1), BTN1A1(1), METTL15(1), PLCL2(1) +3 more
0.060 0.129 2.63e-13 3.35e-12 ✓ sig. Cluster 2 →
Hodgkin lymphoma Lymphoid leukemia
9 genes
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GRAMD1B(1), HLA-DQB1(1), EXOC2(1), IRF4(1), SP140(1), IRF8(1), ACOXL(1), BMF(1), MEGF11(1)
0.069 0.321 2.33e-13 2.96e-12 ✓ sig. Cluster 225 →
Congenital generalized lipodystrophy Generalized lipodystrophy
4 genes
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4 of 4 corroborated by 2+ sources
CAV1(5), BSCL2(4), CAVIN1(3), AGPAT2(4)
0.400 0.667 2.24e-13 2.85e-12 ✓ sig. Cluster 71 →
Focal cortical dysplasia Tuberous sclerosis complex
4 genes
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2 of 4 corroborated by 2+ sources
PKD1(1), TSC2(7), TSC1(7), NTHL1(1)
0.400 0.667 2.24e-13 2.85e-12 ✓ sig. Cluster 70 →
monogenic diabetes Neonatal diabetes mellitus
5 genes
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5 of 5 corroborated by 2+ sources
INS(2), ABCC8(2), KCNJ11(2), GCK(2), PDX1(2)
0.217 0.500 2.16e-13 2.75e-12 ✓ sig. Cluster 36 →
Dravet syndrome Febrile convulsion
5 genes
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5 of 5 corroborated by 2+ sources
GABRG2(7), SCN1A(5), SCN1B(3), SCN2A(2), SCN9A(2)
0.192 0.625 2.04e-13 2.60e-12 ✓ sig. Cluster 47 →
Amphetamine or sympathomimetic abuse Seizures
13 genes
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13 of 13 corroborated by 2+ sources
ACHE(2), BDNF(2), NOS1(2), PDYN(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), FOS(2), GABRG2(2), GAD2(2), HTR1B(2) +1 more
0.063 0.169 2.02e-13 2.58e-12 ✓ sig. Cluster 13 →
Corneal dystrophy Eye disease
9 genes
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1 of 9 corroborated by 2+ sources
ANTXR1(1), COL5A1(1), TCF4(6), RXRA(1), COL24A1(1), LAMB1(1), CHRNB1(1), GDPD5(1), KANK4(1)
0.076 0.281 1.99e-13 2.54e-12 ✓ sig. —
Cortical development malformation Cortical dysplasia with other brain malformations
6 genes
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6 of 6 corroborated by 2+ sources
TUBG1(3), DYNC1H1(3), KIF5C(3), TUBB2B(3), KIF2A(3), TUBGCP2(2)
0.154 0.353 1.96e-13 2.50e-12 ✓ sig. Cluster 176 →
Immune system disease Immune system disorder
5 genes
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5 of 5 corroborated by 2+ sources
ARG1(2), EIF2AK4(2), POMC(2), TRPM7(2), CNR2(2)
0.106 1.000 1.90e-13 2.43e-12 ✓ sig. —
Congenital muscular dystrophy Congenital myopathy
7 genes
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7 of 7 corroborated by 2+ sources
GMPPB(3), LARGE1(2), RYR1(4), LMNA(4), DYSF(3), ITGA7(3), FKRP(4)
0.115 0.318 1.84e-13 2.36e-12 ✓ sig. —
Centronuclear myopathy Congenital myopathy
7 genes
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6 of 7 corroborated by 2+ sources
ACTA1(7), RYR1(5), TTN(4), TPM3(4), CHRNA1(1), CACNA1S(4), CCDC78(6)
0.115 0.318 1.84e-13 2.36e-12 ✓ sig. Cluster 189 →
Osteochondrodysplasias Stickler syndrome
6 genes
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5 of 6 corroborated by 2+ sources
COL2A1(7), COL11A1(6), COL11A2(1), COL9A1(8), COL9A2(7), COL9A3(7)
0.143 0.429 1.78e-13 2.28e-12 ✓ sig. —
Bone neoplasms Connective tissue neoplasm
5 genes
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LRP1B(1), KIF13A(1), THSD7B(1), C10orf143(1), USP20(1)
0.200 0.625 1.58e-13 2.02e-12 ✓ sig. —
Discordant ventriculoarterial connection Transposition of the great arteries
4 genes
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1 of 4 corroborated by 2+ sources
MTHFR(1), SLC19A1(1), MED13L(1), GDF1(2)
0.333 1.000 1.41e-13 1.81e-12 ✓ sig. Cluster 113 →
Lung neoplasms Renal cell carcinoma
20 genes
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1 of 20 corroborated by 2+ sources
HNF1B(1), PTEN(1), TP53(1), GSTP1(1), GSTT1(1), IL6(1), GSTM1(1), GPX1(1), DNMT3A(1), DAPK1(1), MET(5), ERBB2(1) +8 more
0.053 0.144 1.30e-13 1.67e-12 ✓ sig. Cluster 5 →
Conduction disorder of the heart Hereditary bundle branch system defect
5 genes
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TRPM4(1), DSP(1), CASQ2(1), SCN5A(1), SCN1B(1)
0.185 0.714 1.24e-13 1.59e-12 ✓ sig. Cluster 4 →
Congenital neutropenia Neutropenia
7 genes
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2 of 7 corroborated by 2+ sources
CLPB(1), CSF3R(1), ELANE(3), SRP19(1), SEC61A1(1), JAGN1(3), SRP68(1)
0.103 0.412 1.23e-13 1.58e-12 ✓ sig. Cluster 209 →
Glioblastoma Major depressive disorder
142 genes
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45 of 142 corroborated by 2+ sources
PAFAH1B1(1), HNF1B(2), TERT(2), DOCK6(1), ANK3(1), ANO4(1), C6orf118(1), CACNA2D3(1), CDH19(1), CDH4(1), CDKAL1(1), CSMD1(1) +130 more
0.059 0.234 1.23e-13 1.58e-12 ✓ sig. —
genetic developmental and epileptic encephalopathy Rolandic epilepsy
8 genes
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8 of 8 corroborated by 2+ sources
WWOX(2), SZT2(2), SCN1A(2), SCN1B(2), KCNQ3(2), CSTB(2), PLCB1(2), SPTAN1(2)
0.105 0.222 1.14e-13 1.47e-12 ✓ sig. —
Premature ovarian failure Spermatogenic failure
14 genes
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13 of 14 corroborated by 2+ sources
NR5A1(5), STAG3(5), XRCC2(4), C14orf39(4), MSH5(5), FANCM(4), DNAH6(3), SPATA22(2), BRDT(4), FAHD1(1), KASH5(3), MEIOB(4) +2 more
0.065 0.123 1.11e-13 1.42e-12 ✓ sig. Cluster 31 →
Cognition disorder Memory disorders
9 genes
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9 of 9 corroborated by 2+ sources
COMT(2), APP(2), PSEN1(2), IGF2(2), MAPT(2), DRD2(2), SLC6A4(2), CNR1(2), HTR2A(2)
0.093 0.176 1.08e-13 1.39e-12 ✓ sig. —
Glioblastoma Obesity
101 genes
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18 of 101 corroborated by 2+ sources
RUNX1(2), ARHGAP24(1), ARHGEF28(1), C6orf118(1), CCDC33(1), CDH4(1), CDKAL1(2), CSMD1(1), CTNNA3(1), DCC(1), DDX18(1), DGKI(1) +89 more
0.059 0.166 1.08e-13 1.39e-12 ✓ sig. —
Cortical development malformation Microcephaly
9 genes
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8 of 9 corroborated by 2+ sources
TUBG1(2), DYNC1H1(2), AKT3(3), TBCD(2), WDR62(6), KIF5C(2), TUBA1A(1), KIFBP(2), KIF2A(2)
0.072 0.333 1.04e-13 1.34e-12 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.