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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Leukemia Myelodysplastic syndrome
6 genes
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2 of 6 corroborated by 2+ sources
IRF4(1), JAK2(2), DNMT3A(2), CFLAR(1), SPHK1(1), SMPD3(1)
0.071 0.140 2.84e-9 2.45e-8 ✓ sig. Cluster 53 →
Colorectal adenoma Ovarian serous carcinoma
16 genes
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PDE4D(1), RTEL1(1), TERT(1), HLA-DQA1(1), HLA-DRB1(1), PREX1(1), TET2(1), TTC33(1), ATXN2(1), HLA-B(1), SMAD7(1), EIF3H(1) +4 more
0.041 0.115 2.82e-9 2.43e-8 ✓ sig. Cluster 20 →
Intracranial aneurysm Oral submucous fibrosis
4 genes
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4 of 4 corroborated by 2+ sources
IL6(2), MMP9(2), MMP2(2), COL1A2(2)
0.125 0.267 2.80e-9 2.42e-8 ✓ sig. —
Eosinophilia Seasonal allergic rhinitis
10 genes
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2 of 10 corroborated by 2+ sources
EMSY(1), HLA-DQA1(3), JAZF1(1), RORA(1), SMAD3(1), CLEC16A(1), RAD50(1), TSLP(3), WDR36(1), XKR6(1)
0.049 0.100 2.76e-9 2.38e-8 ✓ sig. —
Congenital hyperinsulinism Transient neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
ABCC8(6), KCNJ11(5), GCK(3)
0.231 0.500 2.76e-9 2.38e-8 ✓ sig. Cluster 36 →
Aniridia Axenfeld-rieger syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FOXC1(6), PAX6(4), PITX2(6)
0.231 0.500 2.76e-9 2.38e-8 ✓ sig. —
Long qt syndrome, digenic Short qt syndrome
3 genes
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2 of 3 corroborated by 2+ sources
KCNH2(5), KCNQ1(6), SCN5A(1)
0.214 0.600 2.71e-9 2.34e-8 ✓ sig. —
Aplastic anemia Sickle cell anemia
5 genes
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3 of 5 corroborated by 2+ sources
GSTT1(1), TNF(2), HLA-DQB1(1), CAD(2), UMPS(2)
0.089 0.179 2.65e-9 2.30e-8 ✓ sig. —
Androgenetic alopecia Diverticular disease
26 genes
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2 of 26 corroborated by 2+ sources
RREB1(1), ARHGAP15(2), BORCS5(1), PEX14(1), TRPS1(1), VAPA(1), LRP1(1), EFEMP1(1), PNPT1(1), BABAM2(1), BMP7(1), BTC(1) +14 more
0.041 0.104 2.60e-9 2.25e-8 ✓ sig. —
Bipolar depression Panic disorder
7 genes
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2 of 7 corroborated by 2+ sources
COMT(1), INS(2), HTR1A(1), PDE4B(2), MAOA(1), MBL2(1), TPH2(1)
0.053 0.206 2.59e-9 2.24e-8 ✓ sig. —
Beta thalassemia Hemochromatosis
4 genes
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4 of 4 corroborated by 2+ sources
TFR2(6), HFE(6), TNF(2), HAMP(6)
0.125 0.286 2.54e-9 2.20e-8 ✓ sig. Cluster 135 →
Graft-versus-host disease Granulomatosis with polyangiitis
4 genes
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4 of 4 corroborated by 2+ sources
IL10(3), HLA-DPB1(3), CTLA4(3), PTPN22(2)
0.125 0.286 2.54e-9 2.20e-8 ✓ sig. Cluster 147 →
Cerebral arteriovenous malformations Intracranial arteriovenous malformation
3 genes
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2 of 3 corroborated by 2+ sources
IL6(3), KRAS(3), ENG(1)
0.130 1.000 2.53e-9 2.19e-8 ✓ sig. —
Congenital cartilage disorder Intervertebral disc disease
4 genes
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3 of 4 corroborated by 2+ sources
COL11A1(3), TGFB1(2), COL9A2(1), COL9A3(3)
0.108 0.400 2.44e-9 2.11e-8 ✓ sig. —
Immune system disease Uveomeningoencephalitic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), PTPN22(2), STAT4(2)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. Cluster 1 →
Calcinosis Fahr's disease
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(2), XPR1(2), PDGFB(2), SLC20A2(2)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. —
Urticaria Uveomeningoencephalitic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), PTPN22(2)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. —
Hypercholesterolemia Hypoalphalipoproteinemia
4 genes
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4 of 4 corroborated by 2+ sources
APOA1(4), ABCA1(5), APOB(6), PCSK9(6)
0.080 0.571 2.42e-9 2.10e-8 ✓ sig. —
Anterior segment mesenchymal dysgenesis Rieger syndrome
3 genes
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1 of 3 corroborated by 2+ sources
COL4A1(1), FOXC1(1), PITX2(2)
0.188 0.750 2.39e-9 2.08e-8 ✓ sig. —
Thyroid disease Toxic nodular goiter
5 genes
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NFIA(1), INSR(1), TG(1), FAM227B(1), MICOS10(1)
0.076 0.294 2.39e-9 2.08e-8 ✓ sig. —
Hodgkin disease Lymphoma
5 genes
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CSF3(1), IFNA2(1), PTPN1(1), CFLAR(1), TNFSF8(1)
0.076 0.294 2.39e-9 2.08e-8 ✓ sig. —
Aortic valve disease Marfan syndrome
7 genes
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7 of 7 corroborated by 2+ sources
FBN1(7), NOTCH1(4), COL5A1(2), TGFB2(2), COL1A1(2), COL3A1(2), LOX(2)
0.059 0.163 2.37e-9 2.06e-8 ✓ sig. —
Potassium deficiency Primary aldosteronism
4 genes
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CASZ1(1), B3GLCT(1), LSP1(1), RXFP2(1)
0.129 0.250 2.36e-9 2.05e-8 ✓ sig. Cluster 143 →
Diffuse large b-cell lymphoma Urinary bladder neoplasms
9 genes
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CAT(1), NECTIN2(1), BCL2(1), FAS(1), SOD2(1), KMT2D(1), MYC(1), CDKN2A(1), GLI1(1)
0.047 0.158 2.31e-9 2.01e-8 ✓ sig. —
Hemorrhage Thromboembolism
4 genes
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PLAU(1), F2(1), PLAT(1), F7(1)
0.121 0.333 2.23e-9 1.94e-8 ✓ sig. Cluster 55 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.