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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Distal muscular dystrophy Distal myopathy
3 genes
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3 of 3 corroborated by 2+ sources
MATR3(2), MYH7(2), TTN(2)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. —
Extravasation of diagnostic and therapeutic materials Hyperemia
3 genes
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3 of 3 corroborated by 2+ sources
TAC1(2), KNG1(2), BDKRB2(2)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. Cluster 250 →
Partial epilepsy West syndrome
5 genes
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1 of 5 corroborated by 2+ sources
SCN8A(1), CDKL5(1), SCN1A(2), SCN2A(1), SPTAN1(1)
0.071 0.167 2.04e-8 1.59e-7 ✓ sig. —
Bouillaud’s disease Nasopharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.068 1.000 2.03e-8 1.59e-7 ✓ sig. Cluster 1 →
Dravet syndrome Lennox-gastaut syndrome
3 genes
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3 of 3 corroborated by 2+ sources
GABRG2(3), SCN1A(5), SCN2A(2)
0.167 0.375 2.02e-8 1.58e-7 ✓ sig. Cluster 47 →
Amnesia Bradycardia
4 genes
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4 of 4 corroborated by 2+ sources
TRH(2), PDYN(2), POMC(2), TAC1(2)
0.098 0.222 1.92e-8 1.51e-7 ✓ sig. Cluster 13 →
Fetal akinesia deformation sequence Myasthenic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAPSN(6), MUSK(6), SLC18A3(4), DOK7(5)
0.082 0.333 1.90e-8 1.49e-7 ✓ sig. Cluster 34 →
Brachydactyly Syndactyly
4 genes
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2 of 4 corroborated by 2+ sources
IHH(6), TULP1(1), HOXD13(7), IQCE(1)
0.100 0.190 1.84e-8 1.44e-7 ✓ sig. Cluster 352 →
Congenital total cataract Sutural cataract
3 genes
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3 of 3 corroborated by 2+ sources
CRYBB2(3), GJA8(2), MIP(3)
0.150 0.500 1.84e-8 1.44e-7 ✓ sig. Cluster 43 →
Cyclin-dependent kinase-like 5 deficiency Rett syndrome
3 genes
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2 of 3 corroborated by 2+ sources
CDKL5(4), MECP2(7), RS1(1)
0.150 0.500 1.84e-8 1.44e-7 ✓ sig. Cluster 61 →
Mitochondrial dna depletion syndrome Mitochondrial encephalomyopathy
4 genes
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4 of 4 corroborated by 2+ sources
POLG(5), SCO2(2), TYMP(4), FBXL4(6)
0.095 0.250 1.82e-8 1.43e-7 ✓ sig. —
Dermatomyositis Systemic scleroderma
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DRB5(1), HLA-DPB1(1), STAT4(2), HLA-DPA1(1)
0.093 0.267 1.81e-8 1.42e-7 ✓ sig. Cluster 25 →
Retinal detachment Stargardt disease
5 genes
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3 of 5 corroborated by 2+ sources
ABCA4(4), COL2A1(3), CRB1(2), EYS(1), RHO(1)
0.071 0.179 1.78e-8 1.39e-7 ✓ sig. —
Blindness Rod-cone dystrophy
4 genes
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1 of 4 corroborated by 2+ sources
USH2A(1), RPE65(2), CEP290(1), RHO(1)
0.091 0.286 1.72e-8 1.35e-7 ✓ sig. —
Cleft eyelid Congenital ocular coloboma
3 genes
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PAX6(1), FZD5(1), SALL2(1)
0.107 0.750 1.71e-8 1.34e-7 ✓ sig. Cluster 272 →
Cerebroretinal microangiopathy with calcifications and cysts Dyskeratosis congenita
3 genes
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2 of 3 corroborated by 2+ sources
POT1(4), PFAS(1), CTC1(7)
0.107 0.750 1.71e-8 1.34e-7 ✓ sig. —
Brain injuries Pancreatitis
7 genes
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7 of 7 corroborated by 2+ sources
MPO(2), PARP1(2), PTGS2(2), ALB(2), CCL2(2), IL1RN(2), PPP3CA(2)
0.053 0.123 1.68e-8 1.32e-7 ✓ sig. —
Sepsis Stevens-johnson syndrome
6 genes
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5 of 6 corroborated by 2+ sources
CSF3(2), IFNA2(1), IFNG(2), NOS2(2), MIF(2), LBP(2)
0.056 0.176 1.67e-8 1.31e-7 ✓ sig. —
Hypertrophy Urethral obstruction
5 genes
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AGT(1), COL3A1(1), FN1(1), NPPA(1), EDN1(1)
0.070 0.192 1.66e-8 1.30e-7 ✓ sig. —
Kawasaki disease Sjogren syndrome
7 genes
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4 of 7 corroborated by 2+ sources
TNF(1), HLA-DQB1(2), FCGR2A(3), LTA(2), BLK(3), CCR5(1), TSBP1(1)
0.054 0.109 1.65e-8 1.30e-7 ✓ sig. Cluster 25 →
Diabetes mellitus ketosis prone Maturity-onset diabetes of the young
3 genes
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3 of 3 corroborated by 2+ sources
INS(2), PAX4(3), HNF1A(2)
0.167 0.429 1.64e-8 1.29e-7 ✓ sig. —
Amelogenesis imperfecta Junctional epidermolysis bullosa
4 genes
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4 of 4 corroborated by 2+ sources
COL7A1(4), COL17A1(7), LAMB3(6), LAMC2(6)
0.100 0.222 1.63e-8 1.28e-7 ✓ sig. —
Diabetic foot Neuropathy
3 genes
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LNX1(1), TRDN(1), UNC5D(1)
0.136 0.600 1.59e-8 1.25e-7 ✓ sig. —
Dermatitis Uveitis
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DRB1(2), TNF(1), HLA-B(3), HLA-A(2), IL13(2)
0.075 0.152 1.57e-8 1.24e-7 ✓ sig. Cluster 16 →
Cone dystrophy Congenital stationary night blindness
4 genes
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3 of 4 corroborated by 2+ sources
CACNA1F(2), PDE6B(4), CABP4(1), RHO(4)
0.085 0.333 1.54e-8 1.21e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.