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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cardiomyopathy Left ventricular noncompaction cardiomyopathy
37 genes
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15 of 37 corroborated by 2+ sources
PRDM16(1), ACTN2(1), CTNNA3(1), DMD(2), DSG2(1), EYA4(1), JUP(1), MYPN(1), PKP2(1), RBM20(1), DSP(1), MYH6(3) +25 more
0.150 0.974 5.50e-67 3.81e-65 ✓ sig. Cluster 3 →
Hypertension Myocardial infarction
180 genes
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78 of 180 corroborated by 2+ sources
CYP17A1(1), PRDM16(1), GATA4(3), ZFPM2(1), APOA1(2), CAT(2), ATP2A2(2), SH2B3(3), RUNX1(1), TP53(2), SPI1(1), COL4A4(2) +168 more
0.116 0.310 1.55e-66 1.07e-64 ✓ sig. Cluster 6 →
Coronary artery disease Heart failure
161 genes
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57 of 161 corroborated by 2+ sources
NFIA(1), CASZ1(1), ZFPM2(1), SH2B3(3), ANKRD26(1), AMPD1(1), TP53(1), ACE(2), AGT(3), ALDH1A2(1), ANKRD31(1), APOB(3) +149 more
0.111 0.343 1.56e-66 1.07e-64 ✓ sig. Cluster 6 →
Diabetes mellitus Diabetic retinopathy
63 genes
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14 of 63 corroborated by 2+ sources
INS(2), APOB(2), APOE(2), BMP8A(1), CDKAL1(2), GIPR(2), HMG20A(1), JAZF1(1), KLHL42(1), MACF1(1), MACIR(1), MAU2(1) +51 more
0.158 0.384 2.67e-66 1.83e-64 ✓ sig. Cluster 155 →
Epilepsy Generalized epilepsy
44 genes
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7 of 44 corroborated by 2+ sources
CHRNA7(3), AUTS2(3), CHRM3(1), CUX2(1), GABRA2(1), GRM3(1), HTR1A(1), OGA(1), PCDH7(1), RBFOX1(3), RPH3A(1), TRIM36(1) +32 more
0.173 0.677 5.37e-66 3.67e-64 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness Osteogenesis imperfecta
28 genes
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28 of 28 corroborated by 2+ sources
ALPL(2), BMP1(6), CCDC134(5), SERPINF1(6), TENT5A(6), COL1A1(7), PLOD2(2), FKBP10(6), COL1A2(7), CRTAP(7), KDELR2(5), WNT1(7) +16 more
0.459 0.718 1.14e-65 7.71e-64 ✓ sig. Cluster 66 →
Osteogenesis imperfecta Osteoporosis-pseudoglioma syndrome
28 genes
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28 of 28 corroborated by 2+ sources
ALPL(2), BMP1(6), CCDC134(5), SERPINF1(6), TENT5A(6), COL1A1(7), PLOD2(2), FKBP10(6), COL1A2(7), CRTAP(7), KDELR2(5), WNT1(7) +16 more
0.459 0.718 1.14e-65 7.71e-64 ✓ sig. Cluster 66 →
Autism Tourette syndrome
131 genes
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29 of 131 corroborated by 2+ sources
SOX5(3), RERE(2), ATP2A2(1), AKAP6(1), ANK3(2), BANK1(1), BRAF(1), C8orf90(1), CACNB2(2), CSMD1(3), CSMD3(3), CTNND1(1) +119 more
0.082 0.508 1.14e-65 7.71e-64 ✓ sig. —
Crohn disease Multiple sclerosis
140 genes
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48 of 140 corroborated by 2+ sources
WWOX(1), GLI3(1), SH2B3(1), CEBPA(1), RBPJ(3), ANKRD55(1), BTNL2(1), CDHR3(1), CSMD1(1), ELMO1(1), ERN1(3), ETS1(1) +128 more
0.124 0.243 1.59e-65 1.07e-63 ✓ sig. Cluster 75 →
Heart disease Myocardial ischemia
65 genes
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39 of 65 corroborated by 2+ sources
ABCG8(2), AGT(2), APOC1(1), APOE(2), CDH13(1), ELL(1), ENSA(3), HDAC9(1), ICA1L(2), IL6R(1), JCAD(2), KCNE2(2) +53 more
0.137 0.445 3.63e-65 2.44e-63 ✓ sig. Cluster 6 →
Multiple sclerosis Ulcerative colitis
132 genes
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50 of 132 corroborated by 2+ sources
WWOX(1), GLI3(1), SH2B3(1), CEBPA(1), RBPJ(3), ANKRD55(1), BTNL2(2), ELMO1(1), ERN1(3), ETS1(1), FOXP1(1), FUT2(1) +120 more
0.125 0.229 4.72e-65 3.16e-63 ✓ sig. Cluster 75 →
Barrett esophagus Esophageal adenocarcinoma
29 genes
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1 of 29 corroborated by 2+ sources
ALDH1A2(1), APOB(1), BCL3(1), CRTC1(1), FOXP1(2), KHDRBS2(1), MSRA(1), OR5V1(1), PLCL1(1), TMOD1(1), DPYSL2(1), DPP6(1) +17 more
0.367 0.829 6.08e-65 4.06e-63 ✓ sig. —
Endometrial cancer Endometrial neoplasms
50 genes
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8 of 50 corroborated by 2+ sources
NF1(1), HNF1B(2), BPTF(1), SH2B3(1), BCL11A(1), CACNA2D3(1), H4C8(1), LINGO2(1), MSH6(2), NTM(1), TAFA5(1), CYP19A1(1) +38 more
0.195 0.379 7.87e-65 5.24e-63 ✓ sig. Cluster 65 →
Oligoarticular juvenile idiopathic arthritis Polyarticular juvenile idiopathic arthritis
32 genes
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8 of 32 corroborated by 2+ sources
RUNX1(1), ANKRD55(2), CLIC4(1), IL6R(1), JAZF1(1), UBE2L3(1), FAS(1), IL2(1), RUNX3(1), ATXN2(1), HLA-DQB1(2), IRF1(1) +20 more
0.187 1.000 1.09e-64 7.20e-63 ✓ sig. Cluster 316 →
Insomnia Metabolic syndrome
268 genes
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2 of 268 corroborated by 2+ sources
SOX5(1), BPTF(1), DPYD(1), JMJD1C(1), RREB1(1), CACNA1D(1), ADAMTS18(1), ADARB1(1), ADGRB3(1), AFF3(1), AGAP1(1), AGBL1(1) +256 more
0.127 0.248 2.02e-64 1.33e-62 ✓ sig. Cluster 2 →
Autoimmune disease Juvenile idiopathic arthritis
64 genes
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11 of 64 corroborated by 2+ sources
ADGRL2(1), AFF3(1), ANKRD55(1), ATXN2L(1), DAG1(1), FUT2(1), IGF2(1), LRRK2(1), RHOH(1), TENM3(1), TTC33(1), UBE2L3(1) +52 more
0.158 0.317 2.74e-64 1.81e-62 ✓ sig. —
Diabetes mellitus type 2 Obesity
482 genes
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157 of 482 corroborated by 2+ sources
SOX5(1), RAI1(3), DPYD(3), RERE(1), COMT(2), INS(3), GNAT2(1), PDE4D(1), PRKAR1A(2), RBPJ(2), ABCA1(2), ADGRL2(1) +470 more
0.127 0.404 4.61e-64 3.03e-62 ✓ sig. Cluster 2 →
Cleft palate Complete unilateral cleft lip
28 genes
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24 of 28 corroborated by 2+ sources
FGF8(2), FGFR3(2), KIF7(2), TP63(2), FGF10(2), IRF6(2), SPRY2(2), NOS3(2), TYMS(2), FGFR2(2), MSX1(2), PTCH1(2) +16 more
0.406 0.778 5.44e-64 3.56e-62 ✓ sig. Cluster 115 →
Systemic lupus erythematosus Systemic sclerosis
71 genes
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24 of 71 corroborated by 2+ sources
ARHGAP31(1), AHNAK2(1), BANK1(4), CSK(3), DDX6(1), DGKQ(1), HLA-DQA1(3), HLA-DRA(1), HLA-DRB1(4), JAZF1(4), TNIP1(5), IL1B(1) +59 more
0.100 0.555 1.13e-63 7.40e-62 ✓ sig. —
Coronary artery disease Metabolic syndrome
276 genes
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53 of 276 corroborated by 2+ sources
SOX5(1), DPYD(1), SKI(1), JMJD1C(1), COLEC11(1), MAP3K1(1), ZFPM2(1), APOA1(3), CELA2A(3), BMPR1B(1), SH2B3(3), DOCK6(1) +264 more
0.127 0.241 1.17e-63 7.60e-62 ✓ sig. —
Cleft lip Cleft palate
28 genes
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24 of 28 corroborated by 2+ sources
FGF8(2), FGFR3(2), KIF7(2), TP63(2), FGF10(2), IRF6(2), SPRY2(2), NOS3(2), TYMS(2), FGFR2(2), MSX1(2), PTCH1(2) +16 more
0.400 0.757 2.23e-63 1.45e-61 ✓ sig. Cluster 115 →
Asthma Rheumatoid arthritis
182 genes
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82 of 182 corroborated by 2+ sources
PRDM16(1), CAT(2), RUNX1(3), BLTP1(1), AFF3(3), BTNL2(2), CEP170B(1), DDX6(3), DPP4(1), EMSY(1), EPHA4(1), ERBB3(1) +170 more
0.118 0.275 2.63e-63 1.70e-61 ✓ sig. —
Lipidoses Lipoidosis
19 genes
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19 of 19 corroborated by 2+ sources
SCD(2), LSS(2), FADS2(2), SLC2A3(2), PPARG(2), SERPINA3(2), ASAH1(2), HPN(2), AP1S1(2), ASNS(2), FABP1(2), INHBE(2) +7 more
0.950 1.000 3.37e-63 2.18e-61 ✓ sig. —
Common variable immunodeficiency Juvenile idiopathic arthritis
46 genes
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4 of 46 corroborated by 2+ sources
ADGRL2(1), ANKRD55(1), ATXN2L(1), DAG1(1), FUT2(1), IGF2(1), LRRK2(1), TENM3(1), TTC33(1), IL10(1), CRB1(1), HLA-DQB1(2) +34 more
0.155 0.613 4.84e-63 3.11e-61 ✓ sig. —
Diabetes mellitus type 2 Hypertension
467 genes
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154 of 467 corroborated by 2+ sources
HMGA2(1), CYP17A1(1), BPTF(1), CYP11B2(2), CASZ1(1), RERE(1), COMT(2), INS(3), MAP3K1(1), GATA4(1), ZFPM2(1), APOA1(3) +455 more
0.124 0.406 5.12e-63 3.28e-61 ✓ sig. —

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.