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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Behcet disease Rhinitis
17 genes
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8 of 17 corroborated by 2+ sources
CAT(2), SERPINE1(2), IL10(4), IL1B(2), IL2(1), IL4(2), MBL2(1), TLR4(2), TNF(1), HLA-DQB1(1), IL23R(2), NOD2(1) +5 more
0.110 0.262 5.51e-23 1.19e-21 ✓ sig. Cluster 16 →
Hemoglobinuria paroxysmal Paroxysmal nocturnal hemoglobinuria
6 genes
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2 of 6 corroborated by 2+ sources
HLA-DQA1(1), C3(1), HLA-DQB1(1), C5(1), PIGA(6), PIGT(4)
0.857 1.000 5.41e-23 1.17e-21 ✓ sig. Cluster 1 →
Cold paroxysmal hemoglobinuria Hemoglobinuria paroxysmal
6 genes
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2 of 6 corroborated by 2+ sources
HLA-DQA1(1), C3(1), HLA-DQB1(1), C5(1), PIGA(2), PIGT(2)
0.857 1.000 5.41e-23 1.17e-21 ✓ sig. Cluster 1 →
Cold paroxysmal hemoglobinuria Paroxysmal nocturnal hemoglobinuria
6 genes
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2 of 6 corroborated by 2+ sources
HLA-DQA1(1), C3(1), HLA-DQB1(1), C5(1), PIGA(5), PIGT(3)
0.857 1.000 5.41e-23 1.17e-21 ✓ sig. Cluster 1 →
Congenital hypothyroidism without goiter Congenital thyroid atrophy
6 genes
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TSHR(1), NKX2-5(1), THRA(1), PAX8(1), TSHB(1), IGSF1(1)
0.857 1.000 5.41e-23 1.17e-21 ✓ sig. Cluster 88 →
Cerebellar ataxia, intellectual disability, and dysequilibrium Dysequilibrium syndrome
6 genes
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6 of 6 corroborated by 2+ sources
WDR81(4), VLDLR(5), ATP8A2(4), TUBB2B(3), CA8(3), RIPPLY1(2)
0.857 1.000 5.41e-23 1.17e-21 ✓ sig. Cluster 317 →
Nonsyndromic hearing loss Nonsyndromic intellectual disability
22 genes
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22 of 22 corroborated by 2+ sources
OTOF(4), OTOGL(2), PNPT1(3), TMC1(5), TSPEAR(3), MET(3), DCDC2(3), TBC1D24(3), CABP2(3), LOXHD1(3), PTPRQ(4), KARS1(3) +10 more
0.092 0.186 5.34e-23 1.16e-21 ✓ sig. —
Pancreatic neoplasms Urinary bladder neoplasms
22 genes
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TERT(1), TP53(1), EGFR(1), INPP4B(1), SOD2(1), STAT3(1), TNF(1), PTGS2(1), HIF1A(1), KLF5(1), IFNA2(1), KRAS(1) +10 more
0.092 0.188 5.15e-23 1.12e-21 ✓ sig. Cluster 5 →
Leopard syndrome Noonan syndrome
9 genes
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7 of 9 corroborated by 2+ sources
BRAF(8), RPL6(1), NRAS(7), EPHA2(2), RAF1(7), PTPN11(8), MAP2K1(6), MAP2K2(4), MKRN2(1)
0.225 0.818 5.10e-23 1.11e-21 ✓ sig. Cluster 42 →
Ischemic heart disease Ischemic stroke
18 genes
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1 of 18 corroborated by 2+ sources
ACE(1), APOE(1), KALRN(1), LIPG(1), F2(1), MTHFR(1), PON1(1), PON2(1), TNF(1), MMP9(2), LTA(1), ALOX5AP(1) +6 more
0.088 0.353 4.83e-23 1.05e-21 ✓ sig. —
Heterotaxy syndrome Tetralogy of fallot
13 genes
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11 of 13 corroborated by 2+ sources
PKD1L1(4), CFC1(5), ZIC3(5), LEFTY2(2), CERS1(1), CRIPTO(2), GDF1(3), CFAP45(5), MMP21(4), CFAP53(4), ACVR2B(5), CFC1B(1) +1 more
0.105 0.591 4.67e-23 1.02e-21 ✓ sig. —
Leber hereditary optic neuropathy Mitochondrial complex deficiency
14 genes
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10 of 14 corroborated by 2+ sources
ND1(2), ND2(2), NDUFS2(5), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2), ND4L(2) +2 more
0.104 0.500 4.52e-23 9.87e-22 ✓ sig. —
Congenital muscular dystrophy Walker-warburg syndrome
9 genes
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9 of 9 corroborated by 2+ sources
GMPPB(4), LARGE1(3), CRPPA(4), POMT1(4), POMT2(4), POMGNT1(4), FKRP(5), FKTN(3), POMK(3)
0.300 0.563 4.23e-23 9.26e-22 ✓ sig. Cluster 14 →
Febrile convulsion Generalized epilepsy with febrile seizures plus
9 genes
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9 of 9 corroborated by 2+ sources
CPA6(6), HCN1(7), GABRG2(6), ADGRV1(6), SCN1A(8), SCN1B(7), SCN2A(2), SCN9A(2), STX1B(7)
0.300 0.563 4.23e-23 9.26e-22 ✓ sig. Cluster 47 →
Congenital deformity of clavicle Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of elbow Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of forearm Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of scapula Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Congenital deformity of wrist Lethal congenital contracture syndrome
7 genes
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7 of 7 corroborated by 2+ sources
ADGRG6(5), CNTNAP1(4), GLDN(5), NEK9(3), DNM2(3), ZBTB42(5), ADCY6(5)
0.500 1.000 4.22e-23 9.25e-22 ✓ sig. Cluster 59 →
Age-related macular degeneration Glaucoma
23 genes
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9 of 23 corroborated by 2+ sources
CFI(4), ABCA1(1), ALDH1A2(1), APOE(3), TNXB(1), C2(3), C3(3), MTHFR(1), PON1(1), RAD51B(1), CFB(3), TGFBR1(1) +11 more
0.078 0.277 4.17e-23 9.19e-22 ✓ sig. —
Inflammatory bowel disease Obstructive pulmonary disease
84 genes
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5 of 84 corroborated by 2+ sources
WWOX(1), ATP2A2(1), AFF3(1), ASCC2(1), ATP8B4(1), BSN(1), DCBLD1(1), EMSY(1), ERBB3(1), FADS1(1), FADS2(1), FOXP2(1) +72 more
0.072 0.150 3.87e-23 8.55e-22 ✓ sig. —
Aortic aneurysm Congenital aneurysm of ascending aorta
10 genes
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7 of 10 corroborated by 2+ sources
FBN1(3), SMAD3(2), FOXE3(4), COL3A1(1), MYH11(5), NDE1(1), TGFBR2(2), LOX(5), SRFBP1(1), MYLK(4)
0.154 0.833 3.43e-23 7.57e-22 ✓ sig. Cluster 12 →
Focal segmental glomerulosclerosis Genetic steroid-resistant nephrotic syndrome
11 genes
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9 of 11 corroborated by 2+ sources
NUP107(1), ACTN4(3), ARHGAP24(1), CD2AP(5), FAT1(3), MYO1E(4), PAX2(4), TRPC6(5), ANLN(4), CRB2(5), INF2(5)
0.208 0.379 3.35e-23 7.42e-22 ✓ sig. Cluster 30 →
Focal segmental glomerulosclerosis Hereditary steroid-resistant nephrotic syndrome
11 genes
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11 of 11 corroborated by 2+ sources
NUP107(2), ACTN4(4), ARHGAP24(2), CD2AP(6), MYO1E(5), PAX2(5), TRPC6(6), APOL1(4), ANLN(5), CRB2(6), INF2(6)
0.208 0.379 3.35e-23 7.42e-22 ✓ sig. Cluster 30 →
Endometriosis Migraine
52 genes
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11 of 52 corroborated by 2+ sources
ETV6(1), RUNX1(1), ASCC1(1), CACNA1A(6), CAMK1D(1), ERBB4(1), ETV1(1), FOXP1(1), LRP1B(1), MAP2K5(1), NRP1(3), PTPRD(1) +40 more
0.071 0.138 3.13e-23 6.94e-22 ✓ sig. Cluster 78 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.