Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Alport syndrome Digenic alport syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL4A5(4), COL4A3(6), COL4A4(6)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 49 →
Alport syndrome, x-linked Digenic alport syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL4A5(4), COL4A3(3), COL4A4(3)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 49 →
Autoimmune polyendocrine syndrome Bouillaud’s disease
3 genes
Show details
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 1 →
collagen 6-related myopathy Ullrich congenital muscular dystrophy
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL6A3(7), COL6A1(7), COL6A2(7)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 393 →
Collagen vi muscular dystrophy Ullrich congenital muscular dystrophy
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL6A3(6), COL6A1(6), COL6A2(6)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 393 →
Congenital cataract hypertrophic cardiomyopathy mitochondrial myopathy syndrome Sengers syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
SLC25A4(3), AGK(5), TKFC(3)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 412 →
Mandibuloacral dysostosis Mandibuloacral dysplasia
3 genes
Show details
3 of 3 corroborated by 2+ sources
MTX2(6), LMNA(6), ZMPSTE24(7)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 65 →
Amyotrophic lateral sclerosis Major depressive disorder
88 genes
Show details
44 of 88 corroborated by 2+ sources
GFAP(2), ALCAM(1), ANK3(1), APOE(2), CACNA1A(2), CAMTA1(1), CTNND2(2), DAO(4), DISC1(3), ERBB4(7), GRN(1), INPP4B(1) +76 more
0.040 0.265 6.55e-12 7.30e-11 ✓ sig. —
Anterior segment mesenchymal dysgenesis Axenfeld-rieger syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
COL4A1(2), FOXC1(6), PAX6(2), PITX2(6)
0.235 0.667 6.41e-12 7.19e-11 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Renal agenesis
6 genes
Show details
2 of 6 corroborated by 2+ sources
FRAS1(1), RET(2), ROBO1(1), TBX18(1), GREB1L(2), BICC1(1)
0.095 0.400 6.07e-12 6.81e-11 ✓ sig. —
Dejerine-sottas disease Motor neuron disease
8 genes
Show details
1 of 8 corroborated by 2+ sources
TRPV4(1), DYNC1H1(1), MFN2(1), NEFL(1), SH3TC2(1), PLEKHG5(1), GARS1(1), MPZ(3)
0.078 0.211 5.96e-12 6.70e-11 ✓ sig. Cluster 15 →
Endometriosis Female infertility
19 genes
Show details
14 of 19 corroborated by 2+ sources
NR2F2(2), ESR2(2), HLA-DRB1(2), PAX2(2), RARB(3), CYP19A1(2), ESR1(3), IGF1(3), PRL(2), PAPPA(2), EMX2(3), SYNE1(1) +7 more
0.041 0.184 5.59e-12 6.28e-11 ✓ sig. —
Leber congenital amaurosis Retinal degeneration
8 genes
Show details
8 of 8 corroborated by 2+ sources
PDE6B(2), CRX(6), RPE65(6), NMNAT1(6), RPGRIP1L(2), AHI1(2), RPGR(2), RDH12(6)
0.078 0.216 5.30e-12 5.97e-11 ✓ sig. Cluster 7 →
Dermatitis Hypersensitivity
8 genes
Show details
8 of 8 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(2), IL4(2), TNF(2), HLA-B(3), IL13(2), ITGB2(2), DSG1(2)
0.079 0.211 5.30e-12 5.96e-11 ✓ sig. Cluster 16 →
Chondrodysplasia Rhizomelic chondrodysplasia punctata
4 genes
Show details
4 of 4 corroborated by 2+ sources
PEX7(6), AGPS(6), GNPAT(6), PEX5(6)
0.211 0.800 5.08e-12 5.72e-11 ✓ sig. Cluster 301 →
Congenital neurologic anomalies Spastic paraplegia
13 genes
Show details
9 of 13 corroborated by 2+ sources
ABCD1(1), ALDH18A1(4), AP4M1(2), SETBP1(1), AP4B1(3), AP4E1(3), MCOLN1(1), SMC1A(1), CYP2U1(4), AMPD2(4), ATL1(4), GJC2(4) +1 more
0.058 0.113 5.05e-12 5.69e-11 ✓ sig. —
Congenital pes cavus Polyneuropathy
5 genes
Show details
DYNC1H1(1), SMC1A(1), GDAP1(1), BIVM-ERCC5(1), ERCC5(1)
0.156 0.417 4.64e-12 5.22e-11 ✓ sig. —
Brain injuries Colitis
8 genes
Show details
8 of 8 corroborated by 2+ sources
MPO(2), IL10(2), IL1B(2), TNF(2), IL6(2), RELA(2), PTGS2(2), NOS2(2)
0.075 0.242 4.64e-12 5.22e-11 ✓ sig. Cluster 114 →
Brain injuries Hemolytic uremic syndrome
8 genes
Show details
8 of 8 corroborated by 2+ sources
EPO(2), IL1A(2), IL1B(2), TNF(2), IL6(2), ALB(2), CFB(6), IL1RN(2)
0.075 0.242 4.64e-12 5.22e-11 ✓ sig. —
Congenital hyperinsulinism Maturity-onset diabetes of the young
4 genes
Show details
4 of 4 corroborated by 2+ sources
ABCC8(3), HNF4A(2), KCNJ11(3), GCK(3)
0.250 0.667 4.58e-12 5.17e-11 ✓ sig. Cluster 36 →
Heimler syndrome Peroxisome biogenesis disorder
4 genes
Show details
3 of 4 corroborated by 2+ sources
PEX6(8), GATAD1(1), PEX1(6), PEX26(7)
0.160 1.000 4.54e-12 5.13e-11 ✓ sig. —
Charcot-marie-tooth disease, x-linked Peroneal muscle atrophy
5 genes
Show details
4 of 5 corroborated by 2+ sources
PRPS1(5), AIFM1(5), SBF1(1), GJB1(7), PDK3(6)
0.116 0.625 4.45e-12 5.03e-11 ✓ sig. Cluster 15 →
Arrhythmogenic right ventricular dysplasia Catecholaminergic polymorphic ventricular tachycardia
5 genes
Show details
2 of 5 corroborated by 2+ sources
DSG2(1), PKP2(2), DSP(1), RYR2(7), SCN5A(1)
0.167 0.357 4.27e-12 4.83e-11 ✓ sig. Cluster 4 →
Focal glomerulosclerosis Urethral obstruction
7 genes
Show details
7 of 7 corroborated by 2+ sources
AGT(2), SERPINE1(2), TGFB1(2), ACTA2(2), NOS2(2), FN1(2), EDN1(2)
0.091 0.269 4.05e-12 4.58e-11 ✓ sig. —
Glomerulonephritis Proteinuria
9 genes
Show details
9 of 9 corroborated by 2+ sources
AGT(2), HLA-DQA1(2), VEGFA(2), FAS(2), POMC(2), ALB(2), IFNG(2), IL1RN(2), NPHS1(2)
0.069 0.214 4.02e-12 4.55e-11 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.