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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hereditary atrial fibrillation Long qt syndrome, digenic
4 genes
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4 of 4 corroborated by 2+ sources
KCNE2(2), KCNQ1(2), SCN5A(2), KCNE1(2)
0.154 0.800 2.27e-11 2.40e-10 ✓ sig. —
autosomal recessive primary microcephaly Primary microcephaly
4 genes
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4 of 4 corroborated by 2+ sources
CENPE(4), ASPM(4), CDK5RAP2(4), STIL(4)
0.111 1.000 2.24e-11 2.37e-10 ✓ sig. —
Hypoglycemia Permanent neonatal diabetes mellitus
5 genes
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4 of 5 corroborated by 2+ sources
INS(6), INS-IGF2(1), ABCC8(6), KCNJ11(5), GCK(6)
0.135 0.357 2.22e-11 2.35e-10 ✓ sig. Cluster 36 →
Rod-cone dystrophy Stargardt disease
6 genes
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BEST1(1), LRAT(1), RPE65(1), EYS(1), SNRNP200(1), RHO(1)
0.107 0.214 2.18e-11 2.32e-10 ✓ sig. —
Basal ganglia disease Primary familial brain calcification
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(4), XPR1(4), PDGFB(4), SLC20A2(3)
0.222 0.500 2.13e-11 2.27e-10 ✓ sig. Cluster 390 →
Macular and posterior pole degeneration Mesangiocapillary glomerulonephritis
4 genes
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4 of 4 corroborated by 2+ sources
CFI(2), C3(2), CD46(2), CFH(2)
0.222 0.500 2.13e-11 2.27e-10 ✓ sig. —
Cleft palate Congenital anomaly of limb
6 genes
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6 of 6 corroborated by 2+ sources
TP63(2), IRF6(2), TGFB2(2), FGFR2(2), CHUK(2), COL11A2(2)
0.085 0.375 2.10e-11 2.24e-10 ✓ sig. —
Anxiety disorder Panic disorder
9 genes
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2 of 9 corroborated by 2+ sources
HTR1A(1), PDE4B(1), CRH(2), ADORA2A(2), AURKB(1), BORCS6(1), IQCE(1), MANEA(1), TPH2(1)
0.052 0.265 2.07e-11 2.20e-10 ✓ sig. —
Cryptophthalmos syndrome Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.211 0.571 2.04e-11 2.17e-10 ✓ sig. Cluster 48 →
Cyclocephaly Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.211 0.571 2.04e-11 2.17e-10 ✓ sig. Cluster 48 →
Bullous pemphigoid Interstitial cystitis
6 genes
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2 of 6 corroborated by 2+ sources
0.103 0.261 2.03e-11 2.16e-10 ✓ sig. Cluster 1 →
Colitis Necrosis
7 genes
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7 of 7 corroborated by 2+ sources
IL1B(2), TNF(2), IL6(2), IFNG(2), AHR(2), IL17A(2), NOS2(2)
0.085 0.212 1.99e-11 2.12e-10 ✓ sig. Cluster 114 →
Esophageal neoplasms Gallbladder neoplasms
7 genes
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2 of 7 corroborated by 2+ sources
TP53(1), DCC(2), EGFR(1), BCL2(1), UCHL1(1), ABCB1(2), ERBB2(1)
0.075 0.280 1.99e-11 2.12e-10 ✓ sig. —
Gouty arthritis Hyperuricemia
6 genes
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6 of 6 corroborated by 2+ sources
SLC2A9(3), TGFB1(2), XDH(2), ABCG2(5), ALDH16A1(2), SLC17A3(4)
0.081 0.400 1.97e-11 2.10e-10 ✓ sig. —
Nuclear cataract Sutural cataract
4 genes
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4 of 4 corroborated by 2+ sources
CRYBB2(2), GJA8(3), MIP(2), CRYBA1(2)
0.190 0.667 1.96e-11 2.09e-10 ✓ sig. Cluster 43 →
Congenital generalized lipodystrophy Lipodystrophy
4 genes
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4 of 4 corroborated by 2+ sources
CAV1(7), BSCL2(7), CAVIN1(7), AGPAT2(7)
0.190 0.667 1.96e-11 2.09e-10 ✓ sig. Cluster 71 →
Leber congenital amaurosis Nystagmus
8 genes
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5 of 8 corroborated by 2+ sources
CNGB3(1), GUCY2D(6), RPGRIP1(6), RPE65(6), NMNAT1(6), OTX2(1), CEP290(6), MKS1(1)
0.074 0.186 1.95e-11 2.08e-10 ✓ sig. Cluster 7 →
Brain ischemia Nervous system disease
9 genes
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9 of 9 corroborated by 2+ sources
TP53(2), BDNF(2), CASP3(2), MTHFR(2), TNF(2), PTGS2(2), SOD1(2), CSF3(2), CASP9(2)
0.069 0.132 1.94e-11 2.07e-10 ✓ sig. —
Congenital myopathy Neuromuscular disease
7 genes
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6 of 7 corroborated by 2+ sources
SCN4A(4), ACTN2(2), ACTA1(7), RYR1(4), LMNA(1), MYH7(5), TTN(3)
0.089 0.175 1.94e-11 2.07e-10 ✓ sig. Cluster 189 →
Calcinosis Oral submucous fibrosis
6 genes
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6 of 6 corroborated by 2+ sources
TNF(2), TGFB1(2), MMP9(2), COL1A1(2), TIMP1(2), MMP2(2)
0.098 0.300 1.90e-11 2.04e-10 ✓ sig. —
Allergic contact dermatitis Rhinitis
9 genes
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8 of 9 corroborated by 2+ sources
MRC1(2), IL10(2), IL2(2), IL4(2), TLR4(1), TNF(2), IFNG(2), CCR2(2), IL18(2)
0.069 0.138 1.88e-11 2.01e-10 ✓ sig. Cluster 16 →
Diabetic nephropathy type 2 Hypertensive nephropathy
5 genes
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NYAP2(1), TCF7L2(1), FTO(1), HBB(1), PDILT(1)
0.147 0.278 1.82e-11 1.95e-10 ✓ sig. —
Anophthalmia Congenital ocular coloboma
5 genes
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1 of 5 corroborated by 2+ sources
RARB(1), ELP4(1), PAX6(1), RAX(2), RBP4(1)
0.139 0.357 1.81e-11 1.94e-10 ✓ sig. —
Aortic stenosis Lipoprotein lipase deficiency
7 genes
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1 of 7 corroborated by 2+ sources
FADS1(1), FADS2(1), LDLR(1), LPL(3), CELSR2(1), MYRF(1), TMEM258(1)
0.083 0.233 1.80e-11 1.94e-10 ✓ sig. —
Cataract-microcornea syndrome Lamellar cataract
4 genes
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4 of 4 corroborated by 2+ sources
CRYAA(3), CRYBA4(3), CRYGC(3), CRYGD(3)
0.235 0.444 1.77e-11 1.90e-10 ✓ sig. Cluster 43 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.