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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Deep vein thrombosis Venous thrombosis
4 genes
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4 of 4 corroborated by 2+ sources
PLAT(2), SERPINC1(2), PLG(2), PROC(2)
0.138 0.400 6.52e-10 6.00e-9 ✓ sig. —
Endometrial hyperplasia Nasopharyngeal carcinoma
4 genes
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4 of 4 corroborated by 2+ sources
PTEN(2), TP53(4), KRAS(2), CDKN2A(2)
0.138 0.400 6.52e-10 6.00e-9 ✓ sig. Cluster 3 →
Hyperalgesia Peripheral nervous system disease
8 genes
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GFAP(1), CACNA1H(1), MMP3(1), IGF1(1), IL6(1), NGF(1), PRKCE(1), ALOX12(1)
0.059 0.151 6.48e-10 5.96e-9 ✓ sig. —
Diabetes mellitus type 1 Periodontitis
23 genes
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4 of 23 corroborated by 2+ sources
GATA4(1), ZFPM2(1), CAMK4(1), CCR7(1), LRP1B(1), RBFOX1(1), TCF7L2(1), TSEN2(1), IGF2R(2), PPARG(1), IL6(3), GSTM1(1) +11 more
0.038 0.146 6.45e-10 5.94e-9 ✓ sig. —
Hyperalgesia Temporal lobe epilepsy
7 genes
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7 of 7 corroborated by 2+ sources
PDYN(2), BDKRB2(2), CNR1(2), TRPV1(2), SLC12A5(2), GAL(3), BDKRB1(2)
0.060 0.212 6.41e-10 5.91e-9 ✓ sig. —
Dermatomyositis Polymyositis
5 genes
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3 of 5 corroborated by 2+ sources
IL1A(2), IL1B(2), TNF(2), STAT4(1), PMS1(1)
0.102 0.227 6.06e-10 5.59e-9 ✓ sig. Cluster 25 →
Gestational diabetes Hyperglycemia
8 genes
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8 of 8 corroborated by 2+ sources
INSR(2), LEP(2), IL6(2), ADIPOQ(2), PAX4(2), LEPR(3), GCK(2), HNF1A(2)
0.059 0.154 6.05e-10 5.58e-9 ✓ sig. —
Congenital communicating hydrocephalus Congenital hydrocephalus
3 genes
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3 of 3 corroborated by 2+ sources
MPDZ(6), WDR81(4), TRIM71(5)
0.200 1.000 5.98e-10 5.52e-9 ✓ sig. Cluster 293 →
Congenital microcephaly Lissencephaly
6 genes
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FOXG1(1), CASK(1), ASPM(1), CPAP(1), TUBA3E(1), MZT2B(1)
0.079 0.194 5.95e-10 5.49e-9 ✓ sig. —
Liver failure Necrosis
7 genes
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7 of 7 corroborated by 2+ sources
FAS(2), TNF(2), POMC(2), ATG7(2), CAST(2), IL1RN(2), KRT18(2)
0.069 0.135 5.90e-10 5.45e-9 ✓ sig. —
Oral submucous fibrosis Sepsis
5 genes
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5 of 5 corroborated by 2+ sources
TNF(2), IL6(2), TGFB1(2), IFNG(2), MMP9(2)
0.100 0.250 5.85e-10 5.40e-9 ✓ sig. —
Developmental delay Melas syndrome
5 genes
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3 of 5 corroborated by 2+ sources
ND2(1), COX3(2), ND5(2), ND4(1), CYTB(2)
0.096 0.278 5.83e-10 5.39e-9 ✓ sig. Cluster 32 →
Autoimmune hepatitis Giant cell arteritis
5 genes
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5 of 5 corroborated by 2+ sources
HLA-DRB1(2), IL4(2), IFNG(2), CCL2(2), IL18(2)
0.096 0.278 5.83e-10 5.39e-9 ✓ sig. —
Cortical development malformation Polymicrogyria
5 genes
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4 of 5 corroborated by 2+ sources
DHX37(1), DYNC1H1(2), AKT3(2), WDR62(2), TUBB2B(3)
0.104 0.200 5.81e-10 5.37e-9 ✓ sig. —
Autoimmune thyroid disease Immunodeficiency
13 genes
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13 of 13 corroborated by 2+ sources
IFIH1(5), RHOH(2), IRF1(5), IRF4(3), BACH2(5), CARD9(3), IL2RA(2), IL7R(6), TYK2(3), RASGRP1(5), CD247(4), TBX21(5) +1 more
0.048 0.094 5.76e-10 5.33e-9 ✓ sig. —
Cardiac conduction disease Conduction disorder of the heart
4 genes
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TRPM4(1), MYH6(1), SCN5A(1), SCN1B(1)
0.133 0.444 5.69e-10 5.27e-9 ✓ sig. Cluster 4 →
Bone disease Growth disorder
7 genes
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2 of 7 corroborated by 2+ sources
LTBP3(2), IGF2(1), KCNMA1(1), NPPC(1), SH3PXD2B(1), AHR(2), AFF4(1)
0.063 0.200 5.58e-10 5.17e-9 ✓ sig. —
Aplastic anemia Beta thalassemia
5 genes
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2 of 5 corroborated by 2+ sources
GSTT1(1), TNF(1), HLA-DQB1(1), CAD(2), UMPS(2)
0.102 0.238 5.55e-10 5.15e-9 ✓ sig. —
Aniridia Wagr syndrome
3 genes
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3 of 3 corroborated by 2+ sources
WT1(5), ELP4(5), PAX6(5)
0.273 0.750 5.52e-10 5.12e-9 ✓ sig. Cluster 35 →
Homocystinuria with megaloblastic anemia Intracellular cobalamin metabolism disorder
3 genes
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3 of 3 corroborated by 2+ sources
MTRR(4), MTR(2), MMADHC(2)
0.273 0.750 5.52e-10 5.12e-9 ✓ sig. —
Hypercalciuria Idiopathic infantile hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
KL(2), SLC34A1(5), CYP24A1(5)
0.273 0.750 5.52e-10 5.12e-9 ✓ sig. Cluster 262 →
Carney-stratakis syndrome Cowden disease
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(4), SDHD(5), SDHC(5)
0.273 0.750 5.52e-10 5.12e-9 ✓ sig. Cluster 81 →
Ap-4 deficiency syndrome Intellectual disability
4 genes
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4 of 4 corroborated by 2+ sources
AP4M1(4), AP4B1(4), AP4E1(4), AP4S1(4)
0.052 1.000 5.48e-10 5.09e-9 ✓ sig. —
Ap4-related intellectual disability and spastic paraplegia Intellectual disability
4 genes
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4 of 4 corroborated by 2+ sources
AP4M1(3), AP4B1(3), AP4E1(3), AP4S1(3)
0.052 1.000 5.48e-10 5.09e-9 ✓ sig. —
Polyarticular juvenile idiopathic arthritis Uveomeningoencephalitic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
FAS(2), HLA-DQB1(2), PTPN22(2), STAT4(3)
0.111 0.571 5.35e-10 4.98e-9 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.